| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,491,597 – 5,491,704 |
| Length | 107 |
| Max. P | 0.800348 |
| Location | 5,491,597 – 5,491,704 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.61 |
| Shannon entropy | 0.51276 |
| G+C content | 0.43347 |
| Mean single sequence MFE | -32.09 |
| Consensus MFE | -14.22 |
| Energy contribution | -13.81 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5491597 107 - 23011544 ---GCCAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCACGGCGCGGUGUGUGUAAAGAGU- ---(((......-((((((-----(((....-)))))))))(((((((((..........))))))))).(((((....)))))..(((....))))))..................- ( -33.80, z-score = -1.56, R) >droWil1.scaffold_180708 662454 99 - 12563649 ---GGCAAAGUG-UUGCUU-----GCCAUUG-GGCAGAC-AAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUAGCCAACUCUGUGUAUGU-------- ---(((((....-....))-----))).(((-((((.((-((((((((((..........))))))))).(((((....))))).))).)))..))))............-------- ( -26.90, z-score = -0.96, R) >droSim1.chr2L 5294456 107 - 22036055 ---GCCAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCACGGCGCGGUGUGUGUAAAGAGU- ---(((......-((((((-----(((....-)))))))))(((((((((..........))))))))).(((((....)))))..(((....))))))..................- ( -33.80, z-score = -1.56, R) >droSec1.super_5 3570143 107 - 5866729 ---GCCAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCACGGCGCGGUGUGUGUAAAGAGU- ---(((......-((((((-----(((....-)))))))))(((((((((..........))))))))).(((((....)))))..(((....))))))..................- ( -33.80, z-score = -1.56, R) >droYak2.chr2L 8620096 91 + 22324452 ---ACCAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGUAAGGAGU----------------- ---.((......-((((((-----(((....-)))))))))(((((((((..........))))))))).(((((....)))))............))...----------------- ( -28.00, z-score = -2.51, R) >droEre2.scaffold_4929 5576639 107 - 26641161 ---GCCAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCACGGCUCGGUGUGUGUAAGGAGC- ---(((......-((((((-----(((....-)))))))))(((((((((..........))))))))).....)))..........((..(((((......)))))..))......- ( -33.80, z-score = -1.52, R) >droAna3.scaffold_12916 6523117 104 + 16180835 ---GACAAAGUG-UUGCUU-----GCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCAUUGCUCCCCAUGCCCGCGA---- ---((((.....-((((((-----(((....-)))))))))....))))..(((((.....)))))....(((((....)))))...((((.((((........)))).)))).---- ( -33.00, z-score = -1.93, R) >dp4.chr4_group1 4802415 103 - 5278887 ---GACAAACUGUUUGCCU---CCGCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGUGCCGCUGGGAGUGUGU-------- ---............((((---(((((....-))).((((.(((((((((..........))))))))).(((((....))))).........))))....)))).))..-------- ( -30.40, z-score = -0.93, R) >droPer1.super_5 6398984 111 + 6813705 ---GACAAACUGUUUGCCU---CCGCCAUUG-GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGUGCCGCUGGGAGUGUGUCUGUCCGU ---((((.(((.(..((..---..(((....-))).((((.(((((((((..........))))))))).(((((....))))).........))))))..).))).))))....... ( -33.70, z-score = -1.38, R) >droGri2.scaffold_15252 5972603 101 + 17193109 --GAGCAAAAUG-UUACUU--------GGAGCGGCAGAC-AAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUGUGUGCACAACAUAUAUUAUAUAUGCAGG----- --..(((....(-((((((--------((...(((((..-....)))))..(((((.....))))).....)))))))))(((((((((.....)))))))))....)))...----- ( -29.40, z-score = -2.96, R) >droMoj3.scaffold_6500 23446397 106 - 32352404 ---GGGAAAAUG-UUACUUGGUUAGCAGCGGCAGCAGAC-AAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUGUGUGCACAACAAACA-UACACACUCAC------ ---(((.....(-((((((((((((..((....)).(((-(....))))..(((((.....))))).)))))))))))))..(((((((.........))-))))).)))..------ ( -32.60, z-score = -3.20, R) >droVir3.scaffold_12963 450309 109 + 20206255 GGGGGCAAAAUG-UUACUUGCAUUGC-GCGGCAGCAGAC-AAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUGUGUGCACAACACACA-CACGC-CUUGUGU---- .(((((.....(-(((((((..((((-......))))..-.(((((((((..........)))))))))...))))))))..(((((((.....))))))-)..))-)))....---- ( -35.90, z-score = -1.94, R) >consensus ___GCCAAAGUG_UUGCUU_____GCCAUUG_GGCAGGCAAAAACUGUCAUCUGUCAAUUUGACAGUUUAACUAGGUAAUUAGUAUGUGUGUGCACGGCUCGGUGUGUGUAAG_____ .................................(((.(...(((((((((..........))))))))).(((((....))))).).)))............................ (-14.22 = -13.81 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:11 2011