| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,002,719 – 17,002,810 |
| Length | 91 |
| Max. P | 0.736969 |
| Location | 17,002,719 – 17,002,810 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 73.27 |
| Shannon entropy | 0.46437 |
| G+C content | 0.32548 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -11.24 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17002719 91 - 24543557 UUUAGUUUUAUGAAACUUCUAAUGUGCAUAUAGUUCACCAGAGAACUAUCGGGUUUGAAGGUUUCGUUGAGCUUUCCCCUUAUUUUAUUUA ...(((((.((((((((((.(((.((...(((((((......))))))))).))).))).))))))).))))).................. ( -20.80, z-score = -2.26, R) >droSim1.chr3L 16344765 75 - 22553184 UUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGGGCUUGGAGGUUUUGUUUUAUUUU---------------- .........(..((((((((((.((.(..((((((........)))))).).))))))))))))..)........---------------- ( -16.90, z-score = -1.27, R) >droSec1.super_0 9063426 75 - 21120651 UUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGAGCUUGGAGGUUUCGUUUUAUUUU---------------- .........(((((((((((((.((....((((((........))))))...)))))))))))))))........---------------- ( -18.60, z-score = -1.98, R) >droYak2.chr3L 7126039 91 + 24197627 UUUAGUUUUAUGAAGGUUUUAAUGUACAUAAAGUUGGCAAGAGAGCUAUUCAGUUUCAAGGAUGCGUUCUGCUUUUCUUGUAUUAUUUUUU ..........((((((((((..(((.((......)))))..)))))).))))....((((((.((.....))..))))))........... ( -13.80, z-score = 0.51, R) >droEre2.scaffold_4784 8921816 91 + 25762168 UUUAGUUUCAUGAACAUUUUAAUGUGCAUAAAGUUGGCAAGGGAACUAUUCGGAUUGGAGGUUUCGUUGUGCUUUACUUUUAUUAUUUUUU .........(((.((((....)))).)))(((((..((((.((((((.(((.....))))))))).)))))))))................ ( -15.30, z-score = -0.53, R) >consensus UUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGGGCUUGGAGGUUUCGUUGUGCUUU_C___UAUU_U_UUU_ ...(((...(((((((((((((...((..((((((........))))))...)))))))))))))))...))).................. (-11.24 = -11.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:33 2011