| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,000,644 – 17,000,750 |
| Length | 106 |
| Max. P | 0.962592 |
| Location | 17,000,644 – 17,000,750 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.54 |
| Shannon entropy | 0.53030 |
| G+C content | 0.52581 |
| Mean single sequence MFE | -38.35 |
| Consensus MFE | -21.90 |
| Energy contribution | -23.02 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17000644 106 - 24543557 AUGGGCCGCAGCGUUACGAUGCGACCAACCGUA-AUAGAGUAGUAGUAUAGUAAUAAU-GGCCAGGUGCCGGGGUGUCUGGCUCUAGUUUUCCGU-CGCUGUGUGCCAC--- ...((((((((((..(((.((((......))))-...(((.(.(((..((....))..-(((((((..(....)..)))))))))).).))))))-))))))).)))..--- ( -38.70, z-score = -1.39, R) >droSim1.chr3L 16342672 107 - 22553184 AUGGUCCGUAGCGUUACGAUGCGACCAGCCGUA-AUAGAGUAGUAGUAUAGUAAUAAUGGGCCAGGUGCCGGGGUGUCUGGCUCUAGUUUUCCGU-CGCUGUGGGCCAC--- .((((((((((((((((.((((.((..(((...-...).)).)).)))).)))))...((((((((..(....)..))))))))...........-.))))))))))).--- ( -41.80, z-score = -2.27, R) >droSec1.super_0 9061458 107 - 21120651 AUGGUCCGUAGCGUUACGAUGCGACCAACCGUA-AUAGAGUAGUAGUAUAGUAAUAAUGGGCCAGGUGCCGGGGUGUCUGGCUCUAGUUUUCCGU-CGCUGUGGGCCAC--- .((((((((((((((((.((((.((..(((...-...).)).)).)))).)))))...((((((((..(....)..))))))))...........-.))))))))))).--- ( -41.50, z-score = -2.36, R) >droYak2.chr3L 7124046 102 + 24197627 AUGGGCCGUAGCGUUACGAUGCGACGAACCGUA-AUAGAGUAGUA------UAGUAAUUGGCCAGGUGCCUGGGUGUCUGGCUCUAGUUUGCUGUGGGCCGUGGGCCAC--- ((((..(((.((((....)))).)))..)))).-.........((------((((((..(((((((..(....)..))))))).....))))))))((((...))))..--- ( -39.00, z-score = -1.26, R) >droEre2.scaffold_4784 8919801 99 + 25762168 AUGGGCCGUAGCGUUACGAUGCGACGAACCGUA-AUAGAGUAGUA------UAGUAAUGGGCCAGGUGCCGGUGUGUCUGGCUCUAGUUCUCUG---GCCGCGGGCCAC--- .(((.((((..((((((.((((.((........-.....)).)))------).))))))(((((((.(((((.....)))))........))))---))))))).))).--- ( -38.72, z-score = -1.22, R) >dp4.chrXR_group8 4834417 103 - 9212921 ------GGCACAGGUGUGAAUCCAUCGAACUUACAUCGAUCGUAACGAUCGUAACGAU-AUAUAUAUGUUUAUGUGAUGUGAUGUGGU--GCCAUCUUGUCUGGCCAAAUAA ------(((.(((..(.((...(((((...(((((((.(((((.((....)).)))))-(((((......))))))))))))..))))--)...)).)..))))))...... ( -30.40, z-score = -1.66, R) >consensus AUGGGCCGUAGCGUUACGAUGCGACCAACCGUA_AUAGAGUAGUAGUAUAGUAAUAAUGGGCCAGGUGCCGGGGUGUCUGGCUCUAGUUUUCCGU_CGCUGUGGGCCAC___ .(((.(((((((.((((..((((......))))......))))................(((((((..(....)..)))))))..............))))))).))).... (-21.90 = -23.02 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:32 2011