| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,999,433 – 16,999,535 |
| Length | 102 |
| Max. P | 0.679027 |
| Location | 16,999,433 – 16,999,535 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Shannon entropy | 0.29394 |
| G+C content | 0.49632 |
| Mean single sequence MFE | -33.60 |
| Consensus MFE | -23.07 |
| Energy contribution | -23.88 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16999433 102 - 24543557 GUGCCUAAGCCCAGAGCUC--------------CAACGAGACACCUUAUAGGUGAACCAUUGCA-GGGGGCACAAUUUCCGAAUAAUUUCCAAUGGCCCAAUGCAUGCGGCUCUACU ............((((((.--------------((......((((.....))))......((((-..((((...(((...(((....))).))).))))..)))))).))))))... ( -29.20, z-score = -0.94, R) >droSec1.super_0 9060510 102 - 21120651 GUGCCUAAGCCCAGAGCUCCAUUAACGGAAGCUCAACGAGACACCUUAUAGGUGAACCAUUGCA-GGGGGCACAAUUUCCGAAUAAUUUCCAAUGGCUCUACU-------------- (.(((...((((.(((((((......)).))))).......((((.....))))..((......-)))))).........(((....)))....))).)....-------------- ( -29.70, z-score = -2.07, R) >droSim1.chr3L 16341419 116 - 22553184 GUGCCUAAGCCCAGAGCUCCAUUAACGGAAGCUCAACGAGACACCUUAUAGGUGAACCAUUGCA-GGGGGCACAAUUUCCGAAUAAUUUCCAAUGGCCCAAUGCAUACGGCUCUACU .......((((..(((((((......)).))))).......((((.....))))......((((-..((((...(((...(((....))).))).))))..))))...))))..... ( -34.30, z-score = -2.01, R) >droEre2.scaffold_4784 8918692 116 + 25762168 GUGCCUAAGCCCGGAGCUCCAUUAACGGAAGCUCAACGAGACACCUUAUAGGUGAACCAUUCCAGGGGGGCAGGAUUUCCGAAUAAUUUUCAAUGGCCC-AUGCACAUGGCUCUACU ((((.....(((.(((((((......)).))))).......((((.....))))..........)))((((.((....))(((.....)))....))))-..))))........... ( -37.30, z-score = -1.59, R) >droYak2.chr3L 7122888 116 + 24197627 GUGCCUAAGCCCAGAGCUCCAUUAACGGAAGCUCAACGAGACACCUUAUAGGUGAAAUAUUCCAGGGGGGCAGGAUUUCCGAAUAGUUUUCAAUGGCCC-AUGCACACGGUUCUACU ((((.....(((.(((((((......)).))))).......((((.....))))..........)))((((.((....))(((.....)))....))))-..))))........... ( -37.50, z-score = -2.20, R) >consensus GUGCCUAAGCCCAGAGCUCCAUUAACGGAAGCUCAACGAGACACCUUAUAGGUGAACCAUUGCA_GGGGGCACAAUUUCCGAAUAAUUUCCAAUGGCCC_AUGCACACGGCUCUACU ..(((...((((.(((((((......)).))))).......((((.....)))).............)))).........(((....)))....))).................... (-23.07 = -23.88 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:31 2011