| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,993,964 – 16,994,079 |
| Length | 115 |
| Max. P | 0.749990 |
| Location | 16,993,964 – 16,994,079 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.77 |
| Shannon entropy | 0.32898 |
| G+C content | 0.35003 |
| Mean single sequence MFE | -19.44 |
| Consensus MFE | -13.85 |
| Energy contribution | -13.01 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16993964 115 + 24543557 AUUGAAACUCUGAGAUGAACUGUGUGAAAUACAAAAA-----GAAAAAAGUGAAUAGUAAUGCAUAAUUUGUUGACAGAUCCUGUCAACGCUAAUUAUACUCCAAUCCCUCGAAUAACCG .((((......(((....(((((..............-----...........))))).....(((((((((((((((...)))))))))..)))))).))).......))))....... ( -16.03, z-score = -0.91, R) >droSec1.super_0 9055154 116 + 21120651 AUUGAAACUCUGAGAUGAACUGUGUGAAAUGUAAAAA----AAAAAUAGAUAAAUAGUAAUGCAUAAUUUGUUGACAGCUCCUGUCAACGGUAAUUAUACUCCAAUCAGUCGAAUAACCG .((((....((((..((....((((((.(((((....----...................)))))...((((((((((...))))))))))...))))))..)).))))))))....... ( -19.00, z-score = -1.16, R) >droSim1.chr3L 16335926 120 + 22553184 AUUGAAACUCUGAGAUGAACUGUGUGAAAUGCAAAAAACAAAAAAAUAAAUGAAUAGUAAUGCAUAAUUUGUUGACAGCUCCUGUCAACGCUAAUUAUACUCCAAUCCAUCGAAUAACCG .............((((....((((((.(((((...........................))))).....((((((((...)))))))).....)))))).......))))......... ( -18.93, z-score = -1.94, R) >droEre2.scaffold_4784 8913277 109 - 25762168 AUUGAAAAAGUGAGACAUACUGUGUGAAAUAGAAAAA-----------AAUGAUUAGUAAUGCAUAGUUCGUUGACAGAUCCUGUCGACGCUAAUUAUCUUCCCCUCCCUCCAAUACCCA ((((....((.(((.....((((.....)))).....-----------.((((((((((((.....))).((((((((...)))))))))))))))))......))).)).))))..... ( -19.50, z-score = -2.22, R) >droYak2.chr3L 7117408 110 - 24197627 AUUGAAAAGGUGAGAUAUAUUGUGUGAAAUACAAAACC----------AAUGAAUAGUAGUGCAUAAUUCGUUGACAGGUCCUGUCGACGCUAAUUAUCUUCCGCUUCCUCCAAUACCCG ...(((..((.((((((.((((((((...(((......----------........))).)))))))).(((((((((...))))))))).....))))))))..)))............ ( -23.74, z-score = -1.88, R) >consensus AUUGAAACUCUGAGAUGAACUGUGUGAAAUACAAAAA______AAA_AAAUGAAUAGUAAUGCAUAAUUUGUUGACAGAUCCUGUCAACGCUAAUUAUACUCCAAUCCCUCGAAUAACCG ...........(((....(((((..............................))))).....(((((((((((((((...)))))))))..)))))).))).................. (-13.85 = -13.01 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:30 2011