| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,993,698 – 16,993,818 |
| Length | 120 |
| Max. P | 0.632878 |
| Location | 16,993,698 – 16,993,818 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.90 |
| Shannon entropy | 0.12221 |
| G+C content | 0.39254 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -26.08 |
| Energy contribution | -26.52 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.632878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16993698 120 + 24543557 UUAAACCAAUUUAUUUUUGCCGGUUCUAUAAUUGGCUGAUCCAAGUAGCGCUGGCAAAUGAGGUAUACGAGUAUAUCUCGGCGGAACAGAACAAAUACAAGUCUAAGGUCUCAAUGAACG ....(((........(((((((((.((((..((((.....)))))))).)))))))))(((((((((....)))))))))..........................)))........... ( -29.70, z-score = -1.70, R) >droSec1.super_0 9054887 120 + 21120651 UUAAACCAAUUUAUUUUUGCCGGUUCUAUAAUUGGCUGAUCCAAGUAGCGCUGGCAAAUGAGGUAUACGAGUAUAUCUCGGCGGAACAGAACAAAUACAAGUCUAAGGUCUCAAUGAACG ....(((........(((((((((.((((..((((.....)))))))).)))))))))(((((((((....)))))))))..........................)))........... ( -29.70, z-score = -1.70, R) >droSim1.chr3L 16335659 120 + 22553184 UUAAACCAAUUUAUUUUUGCCCGUUCUAUAAUUGGCUGAUCCAAGUAGCGCUGGCAAAUGAGGUAUACGAGUAUAACUCGGCGGAACAGAACAAAUACAAGUCUAAGGUCUCAAAGAACG ....(((........((((((.((.((((..((((.....)))))))).)).))))))....((((.((((.....))))..(........)..))))........)))........... ( -22.80, z-score = 0.18, R) >droEre2.scaffold_4784 8913047 118 - 25762168 UUAAACCAAUUUAUUUUUGCCGGUUCUAUAAUUGGCUGAUCUAAGUAGCGCUGGCAAAUGAGGUAUAUG--UAUAUCUCGGCGGGACAGAACCAAUAAAAGUUUAGGAUCUCAAUGAACA .....((........(((((((((.((((..((((.....)))))))).))))))))).(((((((...--.))))))))).(((((.((((........))))..).))))........ ( -27.50, z-score = -1.05, R) >droYak2.chr3L 7117177 118 - 24197627 UUAAACCAAUUUAUUUUUGCCGGUUCUAUAAUUGGCUGAUCCAAGUAGCGCUGGCAAAUGAGGUACAUG--UAUAUCUCGGCGGAACAGAACAGAUAAAAGUUUGGGUUCUCAAUGAACA .....(((((((((((((((((((.((((..((((.....)))))))).)))))))))(((((((....--..))))))).............))))))...))))((((.....)))). ( -31.70, z-score = -2.07, R) >consensus UUAAACCAAUUUAUUUUUGCCGGUUCUAUAAUUGGCUGAUCCAAGUAGCGCUGGCAAAUGAGGUAUACGAGUAUAUCUCGGCGGAACAGAACAAAUACAAGUCUAAGGUCUCAAUGAACG .....((........(((((((((.((((..((((.....)))))))).)))))))))(((((((((....)))))))))..)).................................... (-26.08 = -26.52 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:29 2011