| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,978,719 – 16,978,822 |
| Length | 103 |
| Max. P | 0.524527 |
| Location | 16,978,719 – 16,978,822 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.85 |
| Shannon entropy | 0.30576 |
| G+C content | 0.50288 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -19.48 |
| Energy contribution | -19.40 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16978719 103 + 24543557 -AGGGGGACUCCCCUUCAAUGAAGCUUUUUAUGAAAGCAAUGUAUU-CGACAUGCGUAAGCUUUGAUCGCGGGUUCGUGUCCGCGCUAAACGUCACCAUCCACAA -(((((....)))))........((((((...))))))........-.(((..((....))......((((((......))))))......)))........... ( -27.20, z-score = -0.41, R) >droEre2.scaffold_4784 8897652 104 - 25762168 AGAGGGAAUUCCCCUUCGAUGGAGCUUUUUAUGAAAGCUCAGUUUA-CGGGUGGCAUGAGCUUUGAUCGCGGGUUCGUGUCCGCACUAAACGCCACCAUCCACAC .(((((......)))))((((((((((((...)))))))).(((((-...(((((((((((((.......))))))))).))))..))))).....))))..... ( -38.00, z-score = -2.73, R) >droYak2.chr3L 7101295 105 - 24197627 AGAGGGGAUUCCCCCUCCACGGAGCUUUUCGUGAAAGCUCUGUUUUUCAGAAGGCAUCAGCUUUGAUCGCGGGUUCGUGUCUACACUAGACGUUACUAUCCACAU .((((((....)))))).(((((((((((...))))))))))).......(((((....)))))....(.((((...((((((...)))))).....)))).).. ( -35.10, z-score = -2.41, R) >droSec1.super_0 9040056 104 + 21120651 AGCGCGGACUCCCCUUCAUUGGAGCUUUUUAUGAAAGCCAUGUAUU-CGACAUGCGUAAGCUUUGAUCGCGGGUUCGUGUCCGCGCUAAACGUCACCAUCCACAA (((((((((.((((...((..((((((.........(((((((...-..))))).))))))))..))...)))...).))))))))).................. ( -35.30, z-score = -2.77, R) >droSim1.chr3L 16320444 103 + 22553184 AGCGGGGACUCCCCUUCAUUGGAGCUUUU-AUGAAAGCCAUGUAUU-CGACAUGCGUAAGCUUUGAUCGCGGGUUCGUGUCCGCGCUAAACAUCACCAUCCACAA ((((.((((.((((...((..((((((..-......(((((((...-..))))).))))))))..))...)))...).)))).)))).................. ( -31.30, z-score = -1.43, R) >consensus AGAGGGGACUCCCCUUCAAUGGAGCUUUUUAUGAAAGCCAUGUAUU_CGACAUGCGUAAGCUUUGAUCGCGGGUUCGUGUCCGCGCUAAACGUCACCAUCCACAA .((((((....))))))..((((((((.........((.((((......))))))..))))))))...(((((......)))))..................... (-19.48 = -19.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:28 2011