| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,959,156 – 16,959,251 |
| Length | 95 |
| Max. P | 0.611196 |
| Location | 16,959,156 – 16,959,251 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 72.34 |
| Shannon entropy | 0.51634 |
| G+C content | 0.40701 |
| Mean single sequence MFE | -8.86 |
| Consensus MFE | -5.89 |
| Energy contribution | -5.39 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16959156 95 + 24543557 UAUUGUUACAGCCAAAGCGAUGAACAAUCCUCCUCCACCAAUACUACCACUACUACUGAUCAUACUAAUCAUGAAUCCGACACCGAUUCCGAUUC--------- .((((((...((....))....))))))......................................((((..(((((.......))))).)))).--------- ( -8.40, z-score = -0.61, R) >droSim1.chr3L 16297884 95 + 22553184 UAUUGUUACAGCCAAAGCGAUGAACAAUCCUCCUCCACCAAUACUACCACUACUACUGAUCAUACUAAUCAUGAAUCCGACACCGAUUCCGAUUC--------- .((((((...((....))....))))))......................................((((..(((((.......))))).)))).--------- ( -8.40, z-score = -0.61, R) >droSec1.super_0 9020592 92 + 21120651 UAUUGUUACAGCCAAAGCGAUGAACAAUCCUCCACCAAUACUACCACUACUA---CUGAUCAUACUAAUCAUGAAUCCGACACCGAUUCCGAUUC--------- .((((((...((....))....))))))........................---...........((((..(((((.......))))).)))).--------- ( -8.40, z-score = -0.70, R) >droYak2.chr3L 7081410 95 - 24197627 UAUUGUUACAGCCAAAGCGAUGAACAAUCCUCCUCCACCAAUACUACCACUACUACUGAUCAUACUAAUCAUGAAUCCGACACCGAUUCCGAUUC--------- .((((((...((....))....))))))......................................((((..(((((.......))))).)))).--------- ( -8.40, z-score = -0.61, R) >dp4.chrXR_group8 4781899 104 + 9212921 UAUUGUUGCAGCCAAAGCGAUGAUCCAAUGUCCUCCAAUACAACAACCAAUACUACCAAUACUACUACUGAUCAUACUAAUCAUGUAUCCGCAUCCUCCGAAUC ..((((((..((....))((.(((.....))).)).....))))))...................(((((((.......)))).)))................. ( -8.00, z-score = 0.56, R) >droPer1.super_29 1023733 104 + 1099123 UAUUGUUGCAGCCAAAGCGAUGAUCCAAUGUCCUCCAAUACAACAACCAAUACUACCAAUACUACUACUGAUCAUACUAAUCAUGUAUCCGCAUCCUCCGAAUC ..((((((..((....))((.(((.....))).)).....))))))...................(((((((.......)))).)))................. ( -8.00, z-score = 0.56, R) >droMoj3.scaffold_6680 10592583 87 + 24764193 UAUUGUUACAGCCAAAGCGAUGAACAAUCCACCUUCUCCAAUACAACUA------------AUACUAAUCAAGAAUCCGAUACCGAUUCCGAUUCUAAC----- .((((((...((....))....)))))).....................------------..........((((((.((.......)).))))))...----- ( -11.20, z-score = -2.51, R) >droGri2.scaffold_15110 9037888 84 + 24565398 UAUUGUUACAGCCAAAGCGAUGAACAAUCCACCUUCUCCACUGA---UA------------AUACUAAUAACGAAUCCGAUACCGAUUCCGAUUCUAAC----- .((((((...((....))....))))))................---..------------...........(((((.((.......)).)))))....----- ( -10.10, z-score = -1.70, R) >consensus UAUUGUUACAGCCAAAGCGAUGAACAAUCCUCCUCCACCAAUACAACCACUACUACUGAUCAUACUAAUCAUGAAUCCGACACCGAUUCCGAUUC_________ (((((((........)))))))..................................................(((((.......)))))............... ( -5.89 = -5.39 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:26 2011