| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,923,753 – 16,923,843 |
| Length | 90 |
| Max. P | 0.810266 |
| Location | 16,923,753 – 16,923,843 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.69 |
| Shannon entropy | 0.56590 |
| G+C content | 0.54816 |
| Mean single sequence MFE | -22.74 |
| Consensus MFE | -10.26 |
| Energy contribution | -12.14 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16923753 90 - 24543557 ACGACCACUACCACAACUGGCCGACCCGAAAGCUUAGCUGAUGACAGCUCCAGCGAGUUG------GAGAAACCAGAAAAGCUACAGGCUCUGCCU ..................(((.((.((...(((((..(((.......((((((....)))------)))....)))..)))))...)).)).))). ( -25.90, z-score = -2.27, R) >droSim1.chr3L 16271328 85 - 22553184 -----CACCACCACAACUGGCCGACCCGAAAGCUUAGCCGAUGACAGCUCCAGCGAGCUG------GAGAAACCAGAAAAGCUACAGGCUCUGCCU -----.............(((.((.((...(((((......((....((((((....)))------)))....))...)))))...)).)).))). ( -24.50, z-score = -1.94, R) >droSec1.super_0 8994123 85 - 21120651 -----CACCACCACAACUGGCCGACCCGAAAGCUUAGCCGAUGACAGCUCCAGCGAGCUG------GACAAACCAGAAAAGCUACAAGCUCUGCCU -----.............(((.((.(....(((((..(.(.((.((((((....))))))------..))...).)..)))))....).)).))). ( -18.30, z-score = -0.72, R) >droYak2.chr3L 7054564 85 + 24197627 -----CACCACCACAACUGGCAGACCCGAAAGCUUAGCCGAGGACAGCUCCAGCGAGUUG------GAGAAACCAGAAAAGCUACAGGUACUGCCU -----.............(((((..((...(((((..(...((....((((((....)))------)))...)).)..)))))...))..))))). ( -26.20, z-score = -2.62, R) >droEre2.scaffold_4784 8852085 85 + 25762168 -----CACCACCACCACUGGUAGACCCGAAAGCUUAGCCGAGGACAGCUCCAGCGAGCUG------GAGAAACCAGAAAAGCUGCAGGUUCUGCCU -----.............((((((.((...(((((..(...((....((((((....)))------)))...)).)..)))))...)).)))))). ( -29.80, z-score = -2.55, R) >droAna3.scaffold_13337 9604394 88 + 23293914 --------CCCCACCACAGGCCAGCCCGAAAGCUUAGCCGAAGACAGCUCCACUGAGUUGGAGAGUGAGAAGCCAGAAAAGCUCCAGGCCCUGCCC --------........(((((((((......((((..((.....((((((....))))))....).)..)))).......)))...)).))))... ( -20.22, z-score = 0.29, R) >anoGam1.chr2L 32554149 71 - 48795086 -----AGGGUACGCUACCGAUUGUUCCGA-----UAAAUGAUCGAACUUCGGAAAAAUUAGUG---CAAAAACCAGCCAUGAAA------------ -----..(((..((.((..(((.((((((-----..............)))))).)))..)))---)....)))..........------------ ( -14.24, z-score = -0.97, R) >consensus _____CACCACCACAACUGGCCGACCCGAAAGCUUAGCCGAUGACAGCUCCAGCGAGUUG______GAGAAACCAGAAAAGCUACAGGCUCUGCCU ..................(((.((.((...(((((.........((((((....))))))......(......)....)))))...)).)).))). (-10.26 = -12.14 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:24 2011