| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,909,170 – 16,909,220 |
| Length | 50 |
| Max. P | 0.977654 |
| Location | 16,909,170 – 16,909,220 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.00 |
| Shannon entropy | 0.11700 |
| G+C content | 0.54667 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16909170 50 - 24543557 GAGAGGCGGUACCUGUUGCAUGCCGCCUUCGCCAACAGAUCAUCUUGUUG ..(((((((((.........)))))))))...((((((......)))))) ( -16.20, z-score = -1.86, R) >droAna3.scaffold_13337 9589243 50 + 23293914 GAGAGGCGGUACCUGUUGCAUGCCGCCUCCGACAAGAUAGCGUCUUGUUG ..(((((((((.........)))))))))(((((((((...))))))))) ( -23.00, z-score = -4.28, R) >droEre2.scaffold_4784 8837383 50 + 25762168 GAGAGGCGGUACCUGUUGCAUGCCGCCUUCGACAGCAGAUCAUCUUGUUG ..(((((((((.........)))))))))...((((((......)))))) ( -16.40, z-score = -1.55, R) >droYak2.chr3L 7039098 50 + 24197627 GAGAGGCGGUACCUGUUGCAUGCCGCCUUCUACAACAGAUCAUCUUGUUG .((((((((((.........))))))).))).((((((......)))))) ( -16.50, z-score = -2.45, R) >droSec1.super_0 8979615 50 - 21120651 GAGAGGCGGUACCUGUUGCAUGCCGCCUUCGACAACAGAUCAUUUUGUUG ..(((((((((.........)))))))))...(((((((....))))))) ( -18.10, z-score = -3.11, R) >droSim1.chr3L 16256865 50 - 22553184 GAGAGGCGGUACCUGUUGCAUGCCGCCUUCGACAACAGAUCAUCUUGUUG ..(((((((((.........)))))))))...((((((......)))))) ( -16.40, z-score = -2.08, R) >consensus GAGAGGCGGUACCUGUUGCAUGCCGCCUUCGACAACAGAUCAUCUUGUUG ..(((((((((.........)))))))))...((((((......)))))) (-15.74 = -15.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:21 2011