| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,882,088 – 16,882,182 |
| Length | 94 |
| Max. P | 0.570874 |
| Location | 16,882,088 – 16,882,182 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 65.09 |
| Shannon entropy | 0.66607 |
| G+C content | 0.39297 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -9.03 |
| Energy contribution | -10.32 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16882088 94 - 24543557 CCGUAUCUUUUAAAUGCACGUCCACGUGCUAUUAUCGCAAGAUAUUGAGC-----------------------UUUUGU-UGUAAGACUGCAUGUAUAGAGAUCUAUGGUGACAGAUA ((((((((((...(((((.(((.(((.(((..((((....))))...)))-----------------------...)))-.....))))))))....)))))..)))))......... ( -24.80, z-score = -1.80, R) >droPer1.super_29 945029 115 - 1099123 AAAUAUCGUUCCACUGCA---GCACGUGAUCUUCUGGCAGAGGUCUCCUUAACCAGUGAGUAAUCAAUCGAAUUUCGAGCCAUAAAAGUUCCCCUAUUCCUCUACGAAUUCAUAAAAG .....((((..(((((..---......((((((......))))))........)))))...........((((...((((.......))))....))))....))))........... ( -17.29, z-score = 0.17, R) >droSim1.chr3L 16228710 96 - 22553184 CCGUAUCUUUUAAAUGCACGUCCACGUGCUAUUAUCGCAAGAUAUUGGGC---------------------AUUUGGAA-UAUAAGACUGCAUGUAUGAAGAUCUAUGGUGACAGAUA ((((((((((...(((((..((((.(((((..((((....))))...)))---------------------)).)))).-........)))))....)))))..)))))......... ( -29.00, z-score = -2.89, R) >droSec1.super_0 8952826 104 - 21120651 CCGUAUCUUUUAAAUGCACGUCCACGUGCUAUUAUCGCAACAUAUUGGGCUUUUG-------------AGAAGUUGGAA-UGUAAGACUGCAUGUAUGAAGAUCUAUGGUGACAGAAA ((((((((((...(((((.(((....(((.......)))((((.((.((((((..-------------.)))))).)))-)))..))))))))....)))))..)))))......... ( -23.90, z-score = -0.50, R) >droYak2.chr3L 7011755 117 + 24197627 CCGUAUCUUUUAAAUGCACGUACACGUGCCAUUAUCGCAAGUUAUUGGGUUUUUGUUCGGGAACUUGUAGAAGUUGGAA-UUUAAGUCUGCGUGUAUGGAGAUCUAUGAUGACAGAUA (((...(((((....(((((....))))).......(((((((.(((..(....)..))).)))))))))))).)))..-.....((((((((.(((((....)))))))).))))). ( -31.50, z-score = -1.64, R) >droEre2.scaffold_4784 8810295 117 + 25762168 CCGUAUCUUUUAAAUGCACGUACACGUGCUUUUAUCGCAAGUUAUUGGGCUUUUGUUCGGAAACUUUGAUAAGUUAGAA-UUCAAGACUGCAUGUGUGGUGAUCUAUGGUGACAGAUA ...((((.........(((.(((((((((...(((((.(((((.((((((....)))))).))))))))))((((....-.....)))))))))))))))).....((....)))))) ( -31.70, z-score = -1.87, R) >consensus CCGUAUCUUUUAAAUGCACGUCCACGUGCUAUUAUCGCAAGAUAUUGGGCUUUUG_____________AGAAGUUGGAA_UAUAAGACUGCAUGUAUGGAGAUCUAUGGUGACAGAUA ((((((((((...(((((((....)))(((..((((....))))...))).......................................))))....)))))..)))))......... ( -9.03 = -10.32 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:17 2011