| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,869,307 – 16,869,419 |
| Length | 112 |
| Max. P | 0.838036 |
| Location | 16,869,307 – 16,869,419 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.14 |
| Shannon entropy | 0.33387 |
| G+C content | 0.47698 |
| Mean single sequence MFE | -22.01 |
| Consensus MFE | -19.06 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16869307 112 + 24543557 ACCGUCAUCGUCGCAUUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC----AUUGCCCAAACACCUGAGCUCAGGUGUCGUC ............(((...((((((((((((.................))))))...))))))......(((......))).----..)))....(((((((....))))))).... ( -22.53, z-score = -0.92, R) >droAna3.scaffold_13337 9550960 95 - 23293914 UUCGUCAUCA--AAACUCGUGUUUGAACAGCUCC------------------CAUAGAAUGCUCAGCACUUCAAAGAAACUGACAAACAGCCAAGCACCUGAACUCAGGUGUUGC- ...((((...--......(((((.((.((..((.------------------....)).)).)))))))(((...)))..)))).........((((((((....))))))))..- ( -20.50, z-score = -0.66, R) >droEre2.scaffold_4784 8797070 109 - 25762168 ---GCCGUCAUCGUAUUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC----AUAACCCAAACACCUGAGCUCAGGUGUCGUC ---((((....)).....((((((((((((.................))))))...)))))).................))----.........(((((((....))))))).... ( -22.63, z-score = -2.02, R) >droYak2.chr3L 6998933 109 - 24197627 ---AUCGUCAUCAUACUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC----AUAGCCCAAACACCUGAGCUCAGGUGUCGUC ---...............((((((((((((.................))))))...))))))...................----.........(((((((....))))))).... ( -21.93, z-score = -1.81, R) >droSec1.super_0 8939764 112 + 21120651 ACCGUCAUCGUCGCAUUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC----AUUGCCCAAACACCUGAGCUCAGGUGUCGUC ............(((...((((((((((((.................))))))...))))))......(((......))).----..)))....(((((((....))))))).... ( -22.53, z-score = -0.92, R) >droSim1.chr3L 16216992 112 + 22553184 ACCGUCAUCGUCGUAUUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC----AUUGCCCAAACACCUGAGCUCAGGUGUCGUC ..................((((((((((((.................))))))...))))))...................----.........(((((((....))))))).... ( -21.93, z-score = -0.93, R) >consensus ACCGUCAUCAUCGUAUUCGCGUUUGAUCAGCUCCGUCAAAAUCAAAUCUGAUCGUAGAACGCUCACCUCUUCAAACAAAGC____AUUGCCCAAACACCUGAGCUCAGGUGUCGUC ..................((((((((((((.................))))))...))))))................................(((((((....))))))).... (-19.06 = -19.48 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:16 2011