| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,868,441 – 16,868,540 |
| Length | 99 |
| Max. P | 0.719257 |
| Location | 16,868,441 – 16,868,540 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 63.27 |
| Shannon entropy | 0.55931 |
| G+C content | 0.31108 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -8.50 |
| Energy contribution | -10.93 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16868441 99 - 24543557 AUUCAGUAAUUGUAAAUAUAUUAUCACUUGGUUGCUUAGAAGUUAAAUCUCGCUGUACUUUUCAGCAACAAUUAA--AUACAUGUUUGUAAAUAUUUACAU ..........(((((((((...........((((((.((((((.............)))))).))))))......--.((((....)))).))))))))). ( -20.62, z-score = -2.90, R) >droSim1.chr3L 16216137 99 - 22553184 AUACACUAAUUGCAGAUAUAUUAUCAGCUGGUUUCUUAGAAGUUAAAUUCCGCUGUACUUUUUAGCAACAAUUAA--AUACAUGUUUGUAAAUAUUUACAU .........((((((((((......((((...........)))).......((((.......)))).........--....)))))))))).......... ( -12.60, z-score = 0.34, R) >dp4.chrXR_group8 4689764 96 - 9212921 --UUUGUAUUUGC--AUAUGGCAUCUCCUCUUUUGUUA-UUCUUGCAUCAAACUGCAUAACAAACCAAAAGGCAAUGCUCCAUCUUCAGAAAUGUCAACAC --.......((((--((..(((((..(((..(((((((-....((((......))))))))))).....)))..)))))...((....)).))).)))... ( -14.50, z-score = -0.40, R) >droPer1.super_29 932334 96 - 1099123 --UUUGUAUUUGC--AUAUGGCAUCUCUCUUUUUGUUA-UUCUUGCAUCAAACUGCAUAACAAACCGAAAGGCAAUGCUCCAUCUUCAGAAAUGUCAACAC --...........--...((((((.(((...(((((((-....((((......)))))))))))((....))...............))).)))))).... ( -18.20, z-score = -1.53, R) >consensus __UCAGUAAUUGC__AUAUAGCAUCACCUGGUUUCUUA_AACUUAAAUCAAACUGCACAACAAACCAAAAAGCAA__AUACAUCUUCAGAAAUAUCAACAC ......(((((((((((((((.........(((.(((((((((.(((......)))))))))))).)))..........)))))))))))))))....... ( -8.50 = -10.93 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:14 2011