| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,482,732 – 5,482,842 |
| Length | 110 |
| Max. P | 0.683331 |
| Location | 5,482,732 – 5,482,842 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.60 |
| Shannon entropy | 0.38102 |
| G+C content | 0.40176 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5482732 110 - 23011544 -UGCUUUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGACCGCUGCCCCAUGAAAAAAUAAA-- -.....(((((.....)))))(--(((((((.......((.((..........((((((((...))))))))((((.(((....))).)))))).)).....))))))))...-- ( -23.90, z-score = -2.07, R) >droSec1.super_5 3556642 107 - 5866729 -GGCUUUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAAGAAAAUAA----- -(((..(((((((.........--...)))))))((.(((((..........(((((((((...))))))))).........))))).)).....)))............----- ( -25.51, z-score = -1.50, R) >droEre2.scaffold_4929 5566857 111 - 26641161 -CGCUUUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAAGAAAAAAAAGUA- -.(((((((((.....))))).--((((((((......((.((..........((((((((...))))))))(((..(((....)))..))))).))....)))))))))))).- ( -25.10, z-score = -1.29, R) >droYak2.chr2L 8610831 112 + 22324452 -UGCUUUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAAGAAAAAAAAAGAA -....((((((.....))))))--((((((((......((.((..........((((((((...))))))))(((..(((....)))..))))).))....))))))))...... ( -24.50, z-score = -0.99, R) >droAna3.scaffold_12916 6512163 111 + 16180835 AGACUCUGAGAAAGGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAACACAACAAUAA-- .((...(((((((((.......--.)))))))))..))((((..........(((((((((...))))))))).....(((.(((((....)))))....))).)))).....-- ( -25.40, z-score = -1.95, R) >dp4.chr4_group1 4792698 107 - 5278887 -GACGCUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAGCACCAGCA----- -...((((((((((((......--.................)))))......(((((((((...)))))))))......)))))))((((..((((...)))).)).)).----- ( -28.50, z-score = -2.08, R) >droPer1.super_5 6389487 107 + 6813705 -GACGCUGAGAAAUGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAGCACCAGCA----- -...((((((((((((......--.................)))))......(((((((((...)))))))))......)))))))((((..((((...)))).)).)).----- ( -28.50, z-score = -2.08, R) >droWil1.scaffold_180708 648548 96 - 12563649 --------GAAAAAGCUCUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCAGGCCCAGAAACAAUCCA--------- --------..............--...(((((..((((((((..........(((((((((...))))))))).........))))).)))...))))).......--------- ( -19.31, z-score = -2.24, R) >droGri2.scaffold_15252 5959242 105 + 17193109 -UGCAUUCAGCAAUGCUCUUAAUUUUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCAAGCCCCAAGUAGCAGCAAC--------- -.(((((....)))))......................(((((..........((((((((...))))))))((((..((....)).)))).......)))))...--------- ( -20.00, z-score = -1.85, R) >droVir3.scaffold_12963 436559 85 + 20206255 -----UUCAGCAAUGCUUUUAA--UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGGCCCC----------------------- -----....((((((.......--.............))))))..........((((((((...))))))))((..((((....))))..))----------------------- ( -17.55, z-score = -2.50, R) >consensus _GGCUUUGAGAAAUGCUCUUAA__UUUUUUCUCACCUCGUUGCAUUAUUUAACGCAAAUUAAAAUAAUUUGCGGUUCCGUUUCAGCGCGGCCGCUGCCCCAACAAAA_AA_____ ...........(((((.........................))))).......((((((((...))))))))((((.(((....))).))))....................... (-13.05 = -13.60 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:08 2011