| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,803,755 – 16,803,854 |
| Length | 99 |
| Max. P | 0.858609 |
| Location | 16,803,755 – 16,803,854 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 63.94 |
| Shannon entropy | 0.70588 |
| G+C content | 0.58279 |
| Mean single sequence MFE | -35.88 |
| Consensus MFE | -16.98 |
| Energy contribution | -16.39 |
| Covariance contribution | -0.59 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16803755 99 - 24543557 ------CCUAAACCAACGCAGUUCGCCCAGUAACACUAGCAGCAUUCACAAUAACAAUAAUACAAGUGCUGCAGUAACUGCGGCAGCAGCGGCCGCUGUUCUGGC ------......(((.........(((((((...(((.((((((((..................))))))))))).)))).)))((((((....)))))).))). ( -30.37, z-score = -1.56, R) >droYak2.chr3L 6932856 99 + 24197627 ------CCUGAACCAGCGCAGUUCGCCCAGUAACAGUAGCAGCAUUAACAAUAACAACAAUACAAGUGCUGCUGUAACUGCGGCAGCAGCGGCGGCUGUUCUGGC ------......((((.(((((.((((.........((((((((((..................))))))))))...((((....)))).))))))))).)))). ( -36.77, z-score = -1.79, R) >droEre2.scaffold_4784 8731751 99 + 25762168 ------ACUGAACCAGCGCAGUUCGCCCAGUAACAGUAGCAACAUUAACAAUAACAAUAAUACAAGUGCUGCAGUAACUGCGGCAGCAGCGGCGGCUGUUCUGGC ------......((((.((((((.(((((((.((.((((((..((((..........)))).....)))))).)).)))).))).((....)))))))).)))). ( -31.60, z-score = -1.01, R) >droAna3.scaffold_13337 9489001 96 + 23293914 ------CCUCAACCAGCGCAGCUCUCCCAGCAACAUCGCCAGCA---GCAACAAUAAUGCGACAAGUGCUGCUGUGACAGCGGCAGCGGCGGCGGCAGUUCUGGC ------......((((.((.(((.....)))....(((((.((.---(((.......)))......(((((((((....))))))))))))))))..)).)))). ( -34.90, z-score = -0.01, R) >droWil1.scaffold_180916 336919 99 + 2700594 AUUGGCCCAACGUGGUGGCAG----UGGUGCAAUGUCCACA--UCGACCCACACAAAUGCCACAAGUGCAGCUGUGACAGCAGCAGCAGCCGCUGCUGUACUUGC ..((((.....(((((.(..(----(((........)))).--.).).))))......))))(((((((.((((...))))((((((....))))))))))))). ( -36.70, z-score = -0.00, R) >droVir3.scaffold_13049 8472146 90 - 25233164 -----------GCUGGCGCAG----CGCAGCAACGUUUCGGAUGCGACCAAUUCGAAUGCGACCAGCGCGGCGGUUACCGCAGCUGCUGCGGCGGCUGUGCUGGC -----------((..((((((----(((.(((.((((((((((.......))))))).)))..((((((((......)))).)))).))).)).)))))))..)) ( -45.50, z-score = -1.38, R) >droMoj3.scaffold_6680 12120128 87 - 24764193 -----------GCUUGCACAG----CGCAGCAUCCACUCCA---CAACCAAUUCGAAUGGAACUAGCGCAGCUGUCACAGCGGCUGCUGCGGCGGCUGUCUUGGC -----------(((.((....----.))))).((((.((..---..........)).)))).((((.(((((((((.((((....)))).))))))))).)))). ( -32.10, z-score = -0.67, R) >droGri2.scaffold_15110 7497103 84 - 24565398 -----------GCUGGCGCAG----CGCAGCAUUGUUUCGG------CCAAUUCGAAUGCCACAAGUGCAGCAGUUACAGCUGCUGCGGCGGCAGCAGUGCUGGC -----------((((...)))----).((((((((((.(.(------((.........((.....))((((((((....))))))))))).).)))))))))).. ( -39.10, z-score = -1.00, R) >consensus ______CCU_AACCAGCGCAG____CCCAGCAACAUUACCA_CACUACCAAUAACAAUGCUACAAGUGCUGCUGUAACAGCGGCAGCAGCGGCGGCUGUUCUGGC ............((((.((................................................((((((((....)))))))).((....)).)).)))). (-16.98 = -16.39 + -0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:07 2011