Locus 7713

Sequence ID dm3.chr3L
Location 16,763,707 – 16,763,802
Length 95
Max. P 0.536796
window10618

overview

Window 8

Location 16,763,707 – 16,763,802
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 94.32
Shannon entropy 0.09905
G+C content 0.53375
Mean single sequence MFE -30.44
Consensus MFE -28.16
Energy contribution -28.20
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.15
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.09
SVM RNA-class probability 0.536796
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16763707 95 - 24543557
GGGGGAGAUAACCCCAUGUCGGGAGUGGAAAAGCGACAACUGGCAUAAAAGUUUCGGGCACAAACUGCCGCUAAAGACGCAACCUGUGUCCAUGU
((((.......))))(((((((..((.(.....).))..))))))).........(((((((...(((..(....)..)))...))))))).... ( -31.70, z-score =  -1.64, R)
>droSim1.chr3L 16102761 95 - 22553184
GGGGGAGAUAACCCCAUGUCGGGAGUGGAAAAGCGACAACUGGCAUAAAAGUUUCGGGCACAAGCUGCCGCUAAAGACGCAACCUGUGUCCAUGU
((((.......))))(((((((..((.(.....).))..))))))).........(((((((.(.(((..(....)..))).).))))))).... ( -32.90, z-score =  -1.73, R)
>droSec1.super_0 8835412 94 - 21120651
GGGGGAGAUAACCCCAUGACGGGAGUGGAAAAGCGACAACUGGCAU-AAAGUUUCGGGCACAAACUGCCGCUAAAGACGCAACCUGUGUCCAUGU
((((.......))))(((.(((..((.(.....).))..))).)))-........(((((((...(((..(....)..)))...))))))).... ( -27.30, z-score =  -0.47, R)
>droYak2.chr3L 6893170 95 + 24197627
GGGGGAGAUAACCCCAUGUCGGGAGUGGGAAAGCGACAACUGGCAUAAAAGUUUCGGGCACAAACUGCCGCUAAAGACGGAACCUGUGCCUCUGU
((((.......))))(((((((..((.(.....).))..))))))).........(((((((.....((((....).)))....))))))).... ( -32.60, z-score =  -1.42, R)
>droEre2.scaffold_4784 8692145 95 + 25762168
GGGGGAGAUAACCCCAUGUCAGGAGUGGGAAAGCGACAACUGGCAUAAAAGUUUCGGGCGCAAACUGCCGCUAAAGACGCAAUCUGAGUCUCUGU
((((.......))))(((((((..((.(.....).))..)))))))....((((..(((((.....).))))..))))................. ( -27.70, z-score =  -0.47, R)
>consensus
GGGGGAGAUAACCCCAUGUCGGGAGUGGAAAAGCGACAACUGGCAUAAAAGUUUCGGGCACAAACUGCCGCUAAAGACGCAACCUGUGUCCAUGU
((((.......))))(((((((..((.(.....).))..))))))).........(((((((...(((..(....)..)))...))))))).... (-28.16 = -28.20 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:06 2011