| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,761,190 – 16,761,283 |
| Length | 93 |
| Max. P | 0.769721 |
| Location | 16,761,190 – 16,761,283 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.11 |
| Shannon entropy | 0.34066 |
| G+C content | 0.45709 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -14.02 |
| Energy contribution | -17.55 |
| Covariance contribution | 3.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.769721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16761190 93 - 24543557 CUCAUUAGUCAAUUGU---CAGCAGCUCUUGAGGGGAUUCGAGUUUUGGGAUCGUAUCGCAGCACUUGACUCUCAAGUUCUUAUUGCUGAUGGAUU ............(..(---((((((..((((((((...((((((.(((.(((...))).))).))))))))))))))......)))))))..)... ( -30.40, z-score = -2.46, R) >droSim1.chr3L 16100242 96 - 22553184 CUCAUUAGUCAAUUGUCAGCAGCAGCUCUUGAGGGGAUUCGAGUUUUGGGAUCGUAUCGCAGCACUUGACUCUCAAGUUCUUUUUGCUGAUGGAUU ............(..(((((((.((..((((((((...((((((.(((.(((...))).))).))))))))))))))..))..)))))))..)... ( -32.80, z-score = -2.69, R) >droSec1.super_0 8832853 93 - 21120651 CUCAUUAGUCAAUUGU---CAGCAGCUCUUGAGGGGAUUCGAGUUUUGGGAUCGUAUCGCAGCACUUGACUCUCAAGUUCUUAUUGCUGAUGGACU ......((((....((---((((((..((((((((...((((((.(((.(((...))).))).))))))))))))))......)))))))).)))) ( -32.20, z-score = -2.87, R) >droYak2.chr3L 6890523 92 + 24197627 CUCAUUAGUCAAUUGU---CAGCAGCACUUGAGGGG-UUCCAGUUUUGGGAUCGUAUCCCGGCACUUGACUCUCGAGUUCUUAUUGCUGAUGGAUU ............(..(---((((((.(((((((((.-.((.(((.(((((((...))))))).))).))))))))))).....)))))))..)... ( -31.90, z-score = -2.79, R) >droEre2.scaffold_4784 8689403 92 + 25762168 CUCAUUAGUCAAUUGU---CAGCAGCAUUUGAGGGGAUACGAG-UUUGGGAUCGUAUCCCAGCACUUGACUCUCAAGUUCUUAUUGCUGAUGGAUU ............(..(---((((((.(((((((((....((((-((((((((...))))))).))))).))))))))).....)))))))..)... ( -32.40, z-score = -3.39, R) >droAna3.scaffold_13337 9445809 70 + 23293914 CUCAUUAGUCAAUUGU---CAGCAGCCCUUGAGGCAACC----------GAUCGCAUCCCAGCACUUGACUCGCUGAUGUAUU------------- ..(((((((.....((---(((..(((.....)))....----------....((......))..)))))..)))))))....------------- ( -15.40, z-score = -0.55, R) >consensus CUCAUUAGUCAAUUGU___CAGCAGCUCUUGAGGGGAUUCGAGUUUUGGGAUCGUAUCCCAGCACUUGACUCUCAAGUUCUUAUUGCUGAUGGAUU .((((((((...((((.....))))..((((((((...((((((.(((.(((...))).))).))))))))))))))........))))))))... (-14.02 = -17.55 + 3.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:05 2011