| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,756,623 – 16,756,698 |
| Length | 75 |
| Max. P | 0.762567 |
| Location | 16,756,623 – 16,756,698 |
|---|---|
| Length | 75 |
| Sequences | 11 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 66.88 |
| Shannon entropy | 0.68148 |
| G+C content | 0.45721 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -6.30 |
| Energy contribution | -6.73 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16756623 75 - 24543557 ----CUCGCCUGCCCAGAUAAAACAUGAAAC---GCUUUUAAGUGUUCCUCGCAA--CUGAGGUUAAACACCUCAAAGGCAACU ----...((((...............(((((---(((....))))))..))....--.((((((.....)))))).)))).... ( -17.80, z-score = -2.22, R) >droSim1.chr3L 16095888 75 - 22553184 ----CUCGCCUGCCCAGAUAAAACAUGAAAC---GCUUUUAAGUGUUCCUCGCAA--CUGAGGUUAAACACCUCAAAGGCAACU ----...((((...............(((((---(((....))))))..))....--.((((((.....)))))).)))).... ( -17.80, z-score = -2.22, R) >droSec1.super_0 8828425 75 - 21120651 ----CUCGCCUGCCCAGAUAAAACAUGAAAC---GCUUUUAAGUGUUCCUCGCAA--CUGAGGUUAAACACCUCAAAGGCAACU ----...((((...............(((((---(((....))))))..))....--.((((((.....)))))).)))).... ( -17.80, z-score = -2.22, R) >droYak2.chr3L 6885917 77 + 24197627 --CUCCUGCCUGCCCAGAUAAAACAUGAAAC---GCUCUUAAGUGUUCCUCGCAA--CUGAGGUUAAACACCUCAGAGGCAACU --....(((((...............(((((---(((....))))))..))....--(((((((.....))))))))))))... ( -21.60, z-score = -3.08, R) >droEre2.scaffold_4784 8684985 75 + 25762168 ----CUCGCCUGCCCAGAUAAAACAUGAAAC---GCUUUUAAGUGUUCCUCGCAA--CUGAGGUUAAACACCUCACGGGCAACU ----......(((((...........(((((---(((....))))))..))....--.((((((.....)))))).)))))... ( -20.70, z-score = -2.76, R) >droAna3.scaffold_13337 9441759 79 + 23293914 CCCGUGCUGCCUCCCAGAUAAAACAUGAAAC---GCUUUUAAGUGUUCUUUAGA--CCUGAGGUUAAACACCUUAAAGGAGACU ..........((((..............(((---(((....)))))).......--..((((((.....))))))..))))... ( -14.10, z-score = -0.46, R) >dp4.chrXR_group8 4353327 67 + 9212921 --------------CUCGCCUGACAUGAAAC---GCUUUUAAGUGUUCUGUGGGAUCUGGAGGUUAAACACCUUAAAGGAGACU --------------.........(((..(((---(((....))))))..)))(..(((.(((((.....)))))...)))..). ( -16.60, z-score = -0.98, R) >droPer1.super_29 8990 67 + 1099123 --------------CUCGCCUGACAUGAAAC---GCUUUUAAGUGUUCUGUGGGAUCUGGAGGUUAAACACCUUAAAGGAGACU --------------.........(((..(((---(((....))))))..)))(..(((.(((((.....)))))...)))..). ( -16.60, z-score = -0.98, R) >droGri2.scaffold_15110 7450978 76 - 24565398 -----CUUGCUUGCCACAUUAAAUAUGAGACCAGCAGCUUAAGUGUUUCUUGGAA--CUGAGGUUAAGCACCGCCAGCAAUAA- -----.(((((.((..(((.....))).........((((((.(((((....)))--)...).))))))...)).)))))...- ( -15.20, z-score = 0.39, R) >droMoj3.scaffold_6680 12074983 65 - 24764193 --------UUUGUCUGACUGGAAUAUGAGAC---CCCUUUAAGUGUGCCUCAGAG--CUAAGGUUAAGCACCGCAAAG------ --------(((((((((..((.(((((((..---..)))...)))).)))))))(--((.......)))....)))).------ ( -9.70, z-score = 1.03, R) >droVir3.scaffold_13049 8420013 78 - 25233164 -UUUGCCUGCAAGCCAGAUAAAACAUGAGACC--CAUUUGAGGUGUGCCUCAGAG--UGGAGGUUAAGCACCUCCAGACAUGU- -((((.(((.....))).))))(((((.....--..(((((((....))))))).--(((((((.....)))))))..)))))- ( -25.00, z-score = -2.59, R) >consensus ____CUCGCCUGCCCAGAUAAAACAUGAAAC___GCUUUUAAGUGUUCCUCGGAA__CUGAGGUUAAACACCUCAAAGGAAACU ...................................((((...((((((((((......)))))...)))))...))))...... ( -6.30 = -6.73 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:04 2011