| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,747,290 – 16,747,389 |
| Length | 99 |
| Max. P | 0.597240 |
| Location | 16,747,290 – 16,747,389 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 64.00 |
| Shannon entropy | 0.66192 |
| G+C content | 0.41983 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -6.97 |
| Energy contribution | -7.78 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16747290 99 - 24543557 AUUAAAACAUUUGAGAUGCCUGCACAGUAGCAGCAACGUGGAAUAUAUCACAAUU-UGUUGGAGGGGGAAACCCCCUGCUAAAAGGCAUUCGAUUUCGAU ..........(((((.(((((....(((((((((((.((((......))))...)-)))))..((((....)))))))))...))))))))))....... ( -32.50, z-score = -3.48, R) >droEre2.scaffold_4784 8676152 88 + 25762168 ----------AUGGUUUUCCAGCACAAAAGCAACAAUGUGGAAUAUAUCACAAUU-UGUAGGGAGCACAAGUGCCCUGUU-GAAGGCAUUCGAUUUCGAC ----------...((((((.(((......((((...(((((......)))))..)-))).(((.(((....)))))))))-))))))..(((....))). ( -20.00, z-score = -0.56, R) >droYak2.chr3L 6875935 96 + 24197627 AUUAAAACAUUUGAGAUGCCUGCACAGCAGCAGCAACGUGCAAUAUAUCACAAUU-UGUAGGGGGG--AAACCCCCGAUU-AAAGGCAUUCGAAUUCGAU ........(((((((.(((((((((.((....))...))))..............-....(((((.--...)))))....-..))))))))))))..... ( -32.90, z-score = -4.55, R) >droSec1.super_0 8819200 83 - 21120651 AUUAAAACAUUUGAGAUGCCUGCACAGAAGCAGCAACGUGGAAUAUAUCACAAUU-UGUUGGAGGGGGAAGCCCCGAUUUCGAU---------------- ..........(((((((..((((......))))((((((((......))))....-.))))..((((....)))).))))))).---------------- ( -20.40, z-score = -1.29, R) >droSim1.chr3L 16086567 83 - 22553184 AUUAAAACAUUUGAGAUGCCUGCACAGAAGCAGCAACGUGGAAUAUAUCACAAUU-UGUUGGAGGGGGAAGCCCCGAUUUCGAU---------------- ..........(((((((..((((......))))((((((((......))))....-.))))..((((....)))).))))))).---------------- ( -20.40, z-score = -1.29, R) >droMoj3.scaffold_6680 12066500 79 - 24764193 AUUAAAGCAUUUGACAUGCCUGCACAGUUGU-UCACUCCGGAAUAUAAUACUCUUAUGGCAGUUGGUGGAUAAUUUCGUU-------------------- ......((((.....))))......((((((-(((((......(((((.....)))))......))))))))))).....-------------------- ( -12.50, z-score = 0.92, R) >consensus AUUAAAACAUUUGAGAUGCCUGCACAGAAGCAGCAACGUGGAAUAUAUCACAAUU_UGUUGGAGGGGGAAGCCCCCAGUU_GAA________________ ................(((.(((......))))))..(((........)))............((((....))))......................... ( -6.97 = -7.78 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:03 2011