| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,732,361 – 16,732,453 |
| Length | 92 |
| Max. P | 0.519445 |
| Location | 16,732,361 – 16,732,453 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.49629 |
| G+C content | 0.29420 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -6.91 |
| Energy contribution | -7.33 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16732361 92 + 24543557 UCUAAGUUCGUCUAACCGUCUUUGUAAUAUAUUAUGUAUAGAUGUUAUAAUUUGUACUAAGGUUAAAA-GACUC-GAAACUGAAUAAAACCCUU .....(((((.......((((((.((((...(((.((((((((......))))))))))).)))))))-)))..-.....)))))......... ( -15.74, z-score = -1.71, R) >droSim1.chr3L 16067319 89 + 22553184 CCUAAGUUCGUCUAACCGUCUUUGUAAUAUAUUAUGUAUAGAUGUUAUAAUUUGUACUACGGUUAAAAAGACUCGAAAACUGAAUAAAA----- ....((((..(.(((((((....((((....))))((((((((......)))))))).))))))).)..))))................----- ( -15.00, z-score = -1.49, R) >droSec1.super_0 8804077 92 + 21120651 CCUAAGUUCGUCUAACCGUCUUUGUAAUAUAUUAUGUAUAGAUGUUAUAAUUUGUACUAAGGUUAAAA-GACUC-GAAACAGAAUAAAAACCUU .....((((........((((((.((((...(((.((((((((......))))))))))).)))))))-)))..-......))))......... ( -15.99, z-score = -1.68, R) >droYak2.chr3L 6859700 92 - 24197627 CCUAAGUUCGUCUAACCGUCUUUGUAAUAUAUUAUGUAUAGAUGUUGUAAUUUGUACUAAGGUUGAAA-GACUC-GAAACUGAAUAAAACCCCU .....(((((.......((((((.((((...(((.((((((((......))))))))))).)))))))-)))..-.....)))))......... ( -15.84, z-score = -1.78, R) >droEre2.scaffold_4784 8660473 92 - 25762168 CCUAAGUUCGUCUAACCGUCUCUGUAAUAUAUUAUGUAUAGAUGUUAUAAUUUGUACUAAGGUUGAAA-GACUC-AAAACUGAAUAAAACCCCU .....(((((.......((((...((((...(((.((((((((......))))))))))).))))..)-)))..-.....)))))......... ( -13.94, z-score = -1.36, R) >droWil1.scaffold_180698 6226537 72 - 11422946 CUUAAAUUCGUAGGCUCGUAAACAUAAUUUUAAAUAUUUUAAGCCAGAGACUUAAACUGAA--UAAACCACUUU-------------------- .....((((((((((((........(((.......)))........))).))))...))))--)..........-------------------- ( -5.19, z-score = 0.48, R) >consensus CCUAAGUUCGUCUAACCGUCUUUGUAAUAUAUUAUGUAUAGAUGUUAUAAUUUGUACUAAGGUUAAAA_GACUC_GAAACUGAAUAAAACCC_U ....((((....(((((......((((....))))((((((((......))))))))...)))))....))))..................... ( -6.91 = -7.33 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:02 2011