| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,702,387 – 16,702,480 |
| Length | 93 |
| Max. P | 0.595923 |
| Location | 16,702,387 – 16,702,480 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.40 |
| Shannon entropy | 0.16011 |
| G+C content | 0.41524 |
| Mean single sequence MFE | -22.36 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.58 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16702387 93 - 24543557 GGGGCUUUCGUUUCUCAUGUUCAAUGUGCCCAUGGGCUUAUUGGUUUACGCCUAAUCCAGUUUA-UUUUAAGCGAACUUAUAUUUGCCUCUAAG------ (((((...............((((((.(((....))).))))))....(((.(((.........-..))).)))...........)))))....------ ( -20.90, z-score = -1.16, R) >droSim1.chr3L 16029578 100 - 22553184 GGGGCUUUCGUUUCUCAUGUUCAGUGUGCCCAUGGGCUUAUUGGUUUACGCCUAAUCCAGUUUAUUUUUAAGCGAACUUAUGUUUGCCUUUGCCUCUAAG (((((...............((((((.(((....))).))))))...........................((((((....))))))....))))).... ( -24.50, z-score = -1.35, R) >droSec1.super_0 8774593 94 - 21120651 GGGGCUUUCGUUUCUCAUUUUCAAUGUGCCCAUGGGCUUAUUGGUUUACGCCUAAUCCAGUUUAUUUUUAAGCGAACUUAUGUUUGCCUCUAAG------ (((((...(((...((....((((((.(((....))).))))))...............(((((....)))))))....)))...)))))....------ ( -22.60, z-score = -1.83, R) >droYak2.chr3L 6824894 90 + 24197627 GGGGCUUUCGUUUCUCUUGUUCA--GUGCCCAUGGGCUUAUUGGUUUACGCUUAAUCCAGUUUA--UUUAAGCGAACUUUUGUUUGCCUCUAAG------ (((((...............(((--(((((....)))..)))))....(((((((.........--.)))))))...........)))))....------ ( -21.90, z-score = -1.57, R) >droEre2.scaffold_4784 8630212 90 + 25762168 GGGGCUUUCGUUUCUCAUUUUCA--GUGCCCAUGGGCUUAUUGGUUUACGCUUAAUCCAGUUUA--UUUAAGCGAACUUUUGUUUGCCUCUAAG------ (((((...............(((--(((((....)))..)))))....(((((((.........--.)))))))...........)))))....------ ( -21.90, z-score = -1.88, R) >consensus GGGGCUUUCGUUUCUCAUGUUCA_UGUGCCCAUGGGCUUAUUGGUUUACGCCUAAUCCAGUUUA_UUUUAAGCGAACUUAUGUUUGCCUCUAAG______ (((((.(((((((..............(((....)))..(((((.(((....))).)))))........))))))).........))))).......... (-18.74 = -18.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:02 2011