| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,699,428 – 16,699,487 |
| Length | 59 |
| Max. P | 0.848651 |
| Location | 16,699,428 – 16,699,487 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 87.12 |
| Shannon entropy | 0.21731 |
| G+C content | 0.46102 |
| Mean single sequence MFE | -13.40 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16699428 59 + 24543557 UCUCUGUGGCACGUAGACUUACGACCUAAACUAUGGAAGCCCCUGGAGAUUGAACUGUA ((((((.(((.((((....)))).((........))..))).).))))).......... ( -13.20, z-score = -1.15, R) >droEre2.scaffold_4784 8627364 59 - 25762168 UCUCUGUGGCCUGCAGACUUGCAACCUAAAAAACGGAAGCCCAUGGAGAUUGAACUGUA (((((((((.((((......))..((........)).)).))))))))).......... ( -15.40, z-score = -1.85, R) >droYak2.chr3L 6822026 59 - 24197627 UCUCUGUGGCAUGCAGGCUUACGACCUACAAAACGGAAGCCCAUGGAGAUUGAACUGUA (((((((((..((.((((....).))).))...(....).))))))))).......... ( -14.60, z-score = -0.94, R) >droSec1.super_0 8771794 59 + 21120651 UCUCUGUGGCACGUAGACUUACGACCUCAACUAUGGAAGCCCAUUGAGAUUGAACUUUA ((((.(((((.((((....)))).((........))..).)))).)))).......... ( -12.60, z-score = -1.49, R) >droSim1.chr3L 16026286 59 + 22553184 UCUUUGUGGCACGUAGACUUACGACCUCAACUAUGGAAGCCCAUUGAGAUUGAACUUUA ((..((.(((.((((....)))).((........))..)))))..))............ ( -11.20, z-score = -1.19, R) >consensus UCUCUGUGGCACGUAGACUUACGACCUAAACUAUGGAAGCCCAUGGAGAUUGAACUGUA ((((((((((.((((....)))).((........))..).))))))))).......... (-12.44 = -12.44 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:00 2011