| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,693,379 – 16,693,483 |
| Length | 104 |
| Max. P | 0.801746 |
| Location | 16,693,379 – 16,693,483 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 89.29 |
| Shannon entropy | 0.16557 |
| G+C content | 0.41920 |
| Mean single sequence MFE | -27.15 |
| Consensus MFE | -21.98 |
| Energy contribution | -21.73 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16693379 104 + 24543557 GCAACUCGGGAUUUUUUGGGUUAAGGCGCAGCCACGGCUUGCCAAAACGGAAUGUAAUAAAGAAAAA-----CCCACUCAAGAAUCCGAAAGAGCAGACUGCUUUAUUA ........((((((((((((((..((((.(((....)))))))...((.....))..........))-----))))...))))))))...(((((.....))))).... ( -28.30, z-score = -1.68, R) >droSec1.super_0 8765830 109 + 21120651 GCAACUCGGGAUUUUUUGGGUUAAGGCGCAGCCACGGCUUGCCAAAACAGAAUGUAAUAAAAAAAAAAAAAACCCACUCAAGAAUUCGAAACUGCAGACUGCUUUAUUA (((..((((.((((((((((((..((((.(((....)))))))...((.....))...............))))))...))))))))))...))).............. ( -24.80, z-score = -1.23, R) >droYak2.chr3L 6815918 100 - 24197627 GCAACUCCGGAUUUUUUGGGUUAAGGCGCAGCCACGGCUUGCCAAAACAAAAUGUAAUAAAAA---------CCCACUCAAGAAUCUGAAAAAGUAGACUGCUUUAUUA .......(((((((((((((((..((((.(((....)))))))...((.....))......))---------))))...)))))))))..(((((.....))))).... ( -26.60, z-score = -2.41, R) >droEre2.scaffold_4784 8621335 100 - 25762168 GCAACUCCGGAUUUUUUGGGUUAAGGCGCAGCCACGGCUUGCCAAAACAAAAUGUAAUAAAAA---------CCCACUCGAGAAUCCGAAACAGCAGACUGGUUUAUUA .......(((((((((((((((..((((.(((....)))))))...((.....))......))---------))))...)))))))))...(((....)))........ ( -28.90, z-score = -2.60, R) >consensus GCAACUCCGGAUUUUUUGGGUUAAGGCGCAGCCACGGCUUGCCAAAACAAAAUGUAAUAAAAA_________CCCACUCAAGAAUCCGAAACAGCAGACUGCUUUAUUA ((.....(((((((((((((....((((.(((....)))))))...((.....)).................))))...))))))))).....)).............. (-21.98 = -21.73 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:55 2011