| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,692,113 – 16,692,215 |
| Length | 102 |
| Max. P | 0.711897 |
| Location | 16,692,113 – 16,692,215 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.44 |
| Shannon entropy | 0.50690 |
| G+C content | 0.39072 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -13.06 |
| Energy contribution | -12.90 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16692113 102 + 24543557 ----------------ACAACUUUCACAAUGAAUGUGACUCAAGAUCCUAGCGAUGU-UAUCGCGCAUUUCGCAAAUGCAAUCUAUAAGAUUGCGCACCCAAAGUAUUGAGUUGAACUU ----------------.((((..(((((.....))))).((((((.....(((((..-.))))).....))((....((((((.....))))))))..........))))))))..... ( -22.90, z-score = -1.42, R) >droPer1.super_38 761634 110 + 801819 AGAACUCUUAGUGGGAACGGAACUC-UGAGGAACUCUUUCCAAGAUCUGAGGAAUGUCUGGCAAAAACGAUGGAUUUCCAAUCCAUGAGAUUG------CAACGCCUUGGGGGGACC-- .....((((((.((........)))-)))))...(((..(((((.((....)).......((((.....((((((.....))))))....)))------).....)))))..)))..-- ( -26.00, z-score = 1.19, R) >droEre2.scaffold_4784 8620187 101 - 25762168 ----------------ACAACUUUCACAAUGAAUGUGACUCAAGAUCCUGGGGUUAU-UAUCGCGCAAUUCGCAAAUGCAAUCUAUAAGAUUGAGCAGCCAG-GUAUUGAGUUGAAUUU ----------------.((((..(((((.....))))).((((...(((((.(((..-....(((.....))).....(((((.....))))))))..))))-)..))))))))..... ( -27.60, z-score = -2.21, R) >droYak2.chr3L 6814783 92 - 24197627 ----------------ACAACUUUCACAAUGAAUAUGACUCAAGAUCCUAGGGAUGU-UAUCGCG---------AAUGCAAUCUUUAAGAUUGCGCAGUAAG-GAAUUGAGUUGAAUUU ----------------..............((((.((((((((..((((.(.(((..-.))).).---------...((((((.....))))))......))-)).)))))))).)))) ( -21.80, z-score = -1.75, R) >droSec1.super_0 8764601 102 + 21120651 ----------------ACAACUUUCACAAUGAAUAUGACUCAAGAUCCUAGCAAUGU-UAUCGCGCAUUUCGCAAAUGCAAUCUAUAAGAUUGCGCACCCAAAGUAUUGAGUUGAAUUU ----------------..............((((.(((((((((((..((....)).-.)))((((.....))....((((((.....))))))))..........)))))))).)))) ( -21.00, z-score = -1.52, R) >droSim1.chr3L 16019072 102 + 22553184 ----------------ACAACUUUCACAAUGAAUAUGACUCAAGAUCCUAGCAAUGU-UAUCGCGCAUUUCGCAAAUGCAAUCUAUAAGAUUGCGCACCCAAAGUAUUGAGUUGAAUUU ----------------..............((((.(((((((((((..((....)).-.)))((((.....))....((((((.....))))))))..........)))))))).)))) ( -21.00, z-score = -1.52, R) >consensus ________________ACAACUUUCACAAUGAAUAUGACUCAAGAUCCUAGCAAUGU_UAUCGCGCAUUUCGCAAAUGCAAUCUAUAAGAUUGCGCACCCAAAGUAUUGAGUUGAAUUU ...................................((((((((...................(((.....)))....((((((.....))))))............))))))))..... (-13.06 = -12.90 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:54 2011