| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,663,457 – 16,663,525 |
| Length | 68 |
| Max. P | 0.855128 |
| Location | 16,663,457 – 16,663,525 |
|---|---|
| Length | 68 |
| Sequences | 9 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 67.21 |
| Shannon entropy | 0.63916 |
| G+C content | 0.43964 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -4.52 |
| Energy contribution | -4.34 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16663457 68 - 24543557 UUAUCUGCC--UUCUGUGUUGUCGAAUUAGACAAAUAA-CACCCAAGUGG--GGGGAGUCAGUUGGGGAGGUA-- .....((((--((.(((.(((((......)))))...)-))(((((.(((--......))).)))))))))))-- ( -22.40, z-score = -1.95, R) >droSim1.chr3L 15994423 66 - 22553184 UUAUCUGCC--UUCUGUGUUGUCGAAUUAGACAAAUAA-CACCCAAGU----GGGGAGUCAGUUGGGGAGGUA-- .....((((--((.(((.(((((......)))))...)-))(((((.(----((....))).)))))))))))-- ( -22.20, z-score = -2.36, R) >droSec1.super_0 8741194 66 - 21120651 UUAUCUGCC--UUCUGUGUUGUCGAAUUAGACAAAUAA-CAACCAAGU----GGGGAGUCAGUUGGGGAGGUA-- .....((((--((((((.(((((......)))))...)-)).((((.(----((....))).)))))))))))-- ( -21.90, z-score = -2.78, R) >droYak2.chr3L 6791188 68 + 24197627 UUAUCUGCC--UUCUGUGUUGUCGAAUUAGACAAAU-A-CACCCGAGUGGCGGGGGAGUCAGUU-GGGAGGUA-- .....((((--(..(((((((((......))).)))-)-))(((((.((((......)))).))-))))))))-- ( -25.50, z-score = -2.77, R) >droEre2.scaffold_4784 8597152 64 + 25762168 UUAUCUGCC--UUCUGUGUUGUCGAAUUAGACAAAU-A-CACCCAAGU----GGGGAGUCAGUU-GGGAGGUA-- .....((((--(..(((((((((......))).)))-)-))(((((.(----((....))).))-))))))))-- ( -21.20, z-score = -2.23, R) >droAna3.scaffold_13337 9360809 53 + 23293914 UUAUCUGCC--CUCCAAGUUGUCGAAUUAGACAAAUAACCAGCCAGGUA---GGAGGG----------------- .......((--((((...(((((......)))))...(((.....))).---))))))----------------- ( -18.70, z-score = -3.63, R) >dp4.chrXR_group8 4259893 57 + 9212921 UUAUCUGCUCGUAUUUUGUUGUUGAAUUAGACAAACAA-CAGCUAUGU----GAAGAGCAGG------------- ....((((((.(((...(((((((...........)))-))))...))----)..)))))).------------- ( -17.00, z-score = -3.00, R) >droPer1.super_38 734323 57 - 801819 UUAUCUGCUCGUAUUUUGUUGUUGAAUUAGACAAACAA-CAGCUAUGU----GAAGAGCAGG------------- ....((((((.(((...(((((((...........)))-))))...))----)..)))))).------------- ( -17.00, z-score = -3.00, R) >droGri2.scaffold_15110 7369030 72 - 24565398 -UGCUUUUU--GCCGAGUUUGUCGAAUUAGACAAAACAGCACAGAGCAACUAAAGGAGGGAGAUAGGGAGAGAUA -((((((.(--((....((((((......))))))...))).))))))........................... ( -16.60, z-score = -2.42, R) >consensus UUAUCUGCC__UUCUGUGUUGUCGAAUUAGACAAAUAA_CACCCAAGU____GGGGAGUCAGUU_GGGAGGUA__ ..................(((((......)))))......................................... ( -4.52 = -4.34 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:50 2011