| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,478,785 – 5,478,888 |
| Length | 103 |
| Max. P | 0.842925 |
| Location | 5,478,785 – 5,478,888 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.05 |
| Shannon entropy | 0.33452 |
| G+C content | 0.43377 |
| Mean single sequence MFE | -26.71 |
| Consensus MFE | -20.01 |
| Energy contribution | -19.80 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5478785 103 + 23011544 AAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCACUCGGCCGCAUGGCCAUAUACC------- ..((.((((....(((((((..((((........(((((((.((........))...)))))))........)))).)))))))((((....)))))))).))------- ( -29.89, z-score = -1.90, R) >droSim1.chr2L 5281628 103 + 22036055 AAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCACUCGGCCGCAUGGCCAUAUACC------- ..((.((((....(((((((..((((........(((((((.((........))...)))))))........)))).)))))))((((....)))))))).))------- ( -29.89, z-score = -1.90, R) >droSec1.super_5 3552717 103 + 5866729 AAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCACUCGGCCGCAUGGCCAUAUACC------- ..((.((((....(((((((..((((........(((((((.((........))...)))))))........)))).)))))))((((....)))))))).))------- ( -29.89, z-score = -1.90, R) >droEre2.scaffold_4929 5562864 102 + 26641161 -AGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCGCUCGGCGGUAUGGCCAUAUACC------- -.((((((((..((((((((..((((........(((((((.((........))...)))))))........)))).))))))))..))))).))).......------- ( -30.69, z-score = -1.53, R) >droYak2.chr2L 8606880 103 - 22324452 AAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCACUCGGCCGCAUGGCCAUAUACC------- ..((.((((....(((((((..((((........(((((((.((........))...)))))))........)))).)))))))((((....)))))))).))------- ( -29.89, z-score = -1.90, R) >droAna3.scaffold_12916 6508586 110 - 16180835 GAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAAUGCAGCACUCGGCCGUGGAGCCAUACAUCCCAUUAG (((((......(((((((....))))))).....(((((((.((........))...)))))))..............)).)))(((......))).............. ( -28.40, z-score = -1.41, R) >dp4.chr4_group1 4788537 103 + 5278887 CAGGUAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAACUGCAGCACUCGGCCAUAGAGCCAUAUAGC------- ..(.(((((....(((((((...........(((((((.((((....)))).))).))))((((.........)))))))))))(((......)))))))).)------- ( -25.70, z-score = -1.19, R) >droPer1.super_5 6385293 103 - 6813705 CAGGUAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAACUGCAGCACUCGGCCAUAGAGCCAUAUAGC------- ..(.(((((....(((((((...........(((((((.((((....)))).))).))))((((.........)))))))))))(((......)))))))).)------- ( -25.70, z-score = -1.19, R) >droWil1.scaffold_180708 643883 103 + 12563649 UAGGUAUAUCCAUGAGUGUUAACAUUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAAUGCAGCACUCGACCAUAGCACCAUAUAGC------- ..(((.(((...((((((((..((((........(((((((.((........))...)))))))........)))).))))))))...)))..))).......------- ( -22.89, z-score = -1.35, R) >droVir3.scaffold_12963 19773493 83 + 20206255 -----AGGUAUGAGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAAUGCAGUCAUAUAGC---------------------- -----..(((((((((((....))))).......(((((((.((........))...)))))))...............))))))...---------------------- ( -20.70, z-score = -1.58, R) >droGri2.scaffold_15252 11237580 83 + 17193109 -----AGGUAUGAGAGUGUUAACACUCAUAACAACUGCUAAAGUCCAUUUUCGCAUGUUGGCAGCUUAUAAAAAUGCAGUCAUAUACC---------------------- -----.((((((.(((((....)))))....(((((((.((((....)))).))).))))(((...........))).....))))))---------------------- ( -20.20, z-score = -1.99, R) >consensus AAGGCAUAUCCAUGAGUGUUAACACUCAUAACAACUGCUAAAGCCCAUUUUCGCAUGUUGGCAGCUUAUAAAAGUGCAGCACUCGGCCGUAUGGCCAUAUACC_______ ..(((......(((((((....))))))).....(((((((.((........))...))))))).............................))).............. (-20.01 = -19.80 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:06 2011