| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,650,474 – 16,650,532 |
| Length | 58 |
| Max. P | 0.760559 |
| Location | 16,650,474 – 16,650,532 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 79.31 |
| Shannon entropy | 0.29930 |
| G+C content | 0.52935 |
| Mean single sequence MFE | -12.60 |
| Consensus MFE | -12.27 |
| Energy contribution | -11.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16650474 58 + 24543557 UGUCAAAGUGUCCUGUUGGAGUUCCGUCCAGGACUACUACCCACAACCCCGUCUGCGU ......(((((((((.(((....)))..)))))).))).................... ( -13.90, z-score = -0.85, R) >droYak2.chr3L 6777477 56 - 24197627 --UUUCAGUGUCCUGCUGGAGUUCCGUUCAGGAUAACUCCCCACAACCCCGACUGCCU --...((((((..((..((((((((.....)))..))))).))..))....))))... ( -11.40, z-score = -0.50, R) >droEre2.scaffold_4784 8584212 58 - 25762168 UUUCAGAGUGUCCUGUUGGAGUUCCAUUCAGGAUUACAACCCACAACCCCUGCAGCUU .......((((((((.(((....)))..))))).)))..................... ( -12.50, z-score = -0.94, R) >consensus U_UCAAAGUGUCCUGUUGGAGUUCCGUUCAGGAUUACUACCCACAACCCCGACUGCCU .......((((((((.(((....)))..)))))).))..................... (-12.27 = -11.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:45 2011