| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,648,893 – 16,648,988 |
| Length | 95 |
| Max. P | 0.763556 |
| Location | 16,648,893 – 16,648,988 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 88.36 |
| Shannon entropy | 0.20582 |
| G+C content | 0.50790 |
| Mean single sequence MFE | -23.51 |
| Consensus MFE | -21.68 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16648893 95 - 24543557 UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUGCCCGAAAACUUCUAGCCAUGAAUCAGCGCCCAUUGGCAAAAAAAAAAAACACUU .....((((((((((....))))))).)))......(((.((..((.....))..)).))).......(((....)))................. ( -23.40, z-score = -1.22, R) >droEre2.scaffold_4784 8582700 90 + 25762168 UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUACCCC-GAACUUCUAGCCAUGAAUCAGCACUCGUUGGUCAAAAAUAGCAUU---- .....((((((((((....))))))).)))...............-......(((....(((.(((((....))))))))....)))....---- ( -22.80, z-score = -1.29, R) >droYak2.chr3L 6775946 90 + 24197627 UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUACCCG-AAACUUCUAGCCAUGAAUCAGCGCCCAUUGGCGAAGAAAACAAUC---- .....((((((((((....))))))).)))...............-...((((..((.........))(((....))))))).........---- ( -24.50, z-score = -1.55, R) >droSec1.super_0 8726845 90 - 21120651 UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUGCCCCAAAACUUCUAGCCAUGAAUCAGCGCCCAUUGGCGAAAAAACACUU----- .....((((((((((....))))))).)))......(((.((.............)).)))......((((....))))...........----- ( -23.42, z-score = -0.99, R) >droSim1.chr3L 15979840 92 - 22553184 UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUGCCCCAAAACUUCUAGCCAUGAAUCAGCGCCCAUUGGCGAAAAAAAACACUU--- .....((((((((((....))))))).)))......(((.((.............)).)))......((((....)))).............--- ( -23.42, z-score = -1.09, R) >consensus UUAUCGGCCACCUGCUGCAGCAGGUGUGUCAUCCCGCAUUGCCCCAAAACUUCUAGCCAUGAAUCAGCGCCCAUUGGCGAAAAAAAACAUC____ .....((((((((((....))))))).))).........................((((((..........)).))))................. (-21.68 = -21.36 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:44 2011