Locus 7693

Sequence ID dm3.chr3L
Location 16,639,736 – 16,639,796
Length 60
Max. P 0.998789
window10584 window10585

overview

Window 4

Location 16,639,736 – 16,639,796
Length 60
Sequences 3
Columns 60
Reading direction forward
Mean pairwise identity 94.44
Shannon entropy 0.07652
G+C content 0.31111
Mean single sequence MFE -15.23
Consensus MFE -12.30
Energy contribution -13.30
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -4.04
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.93
SVM RNA-class probability 0.996432
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16639736 60 + 24543557
AUUUUAGUGCACACCUAAUUUUAUAAAAACGAUUUUGAUUGAGCGUGCACUAUGUACAGA
....((((((((.(.(((((................))))).).))))))))........ ( -13.09, z-score =  -2.68, R)
>droSim1.chr3L 15970580 60 + 22553184
AUUUUAGUGCACACCUAAUUUAAAAUAAACGAUUUUGAUAGAGCGUGCACUAUAUACAGA
....((((((((.((((..(((((((.....)))))))))).).))))))))........ ( -16.30, z-score =  -5.14, R)
>droSec1.super_0 8717694 60 + 21120651
AUUUUAGUGCACACCUAAUUUAAAAUAAACGAUUUUGAUAGAGCGUGCACUAUGUACAGA
....((((((((.((((..(((((((.....)))))))))).).))))))))........ ( -16.30, z-score =  -4.29, R)
>consensus
AUUUUAGUGCACACCUAAUUUAAAAUAAACGAUUUUGAUAGAGCGUGCACUAUGUACAGA
....((((((((..((...(((((((.....)))))))...)).))))))))........ (-12.30 = -13.30 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 16,639,736 – 16,639,796
Length 60
Sequences 3
Columns 60
Reading direction reverse
Mean pairwise identity 94.44
Shannon entropy 0.07652
G+C content 0.31111
Mean single sequence MFE -16.76
Consensus MFE -15.13
Energy contribution -15.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -4.76
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.49
SVM RNA-class probability 0.998789
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16639736 60 - 24543557
UCUGUACAUAGUGCACGCUCAAUCAAAAUCGUUUUUAUAAAAUUAGGUGUGCACUAAAAU
........((((((((((..(((..................)))..)))))))))).... ( -15.67, z-score =  -4.32, R)
>droSim1.chr3L 15970580 60 - 22553184
UCUGUAUAUAGUGCACGCUCUAUCAAAAUCGUUUAUUUUAAAUUAGGUGUGCACUAAAAU
........((((((((((.(((..(((((.....)))))....))))))))))))).... ( -17.30, z-score =  -5.06, R)
>droSec1.super_0 8717694 60 - 21120651
UCUGUACAUAGUGCACGCUCUAUCAAAAUCGUUUAUUUUAAAUUAGGUGUGCACUAAAAU
........((((((((((.(((..(((((.....)))))....))))))))))))).... ( -17.30, z-score =  -4.91, R)
>consensus
UCUGUACAUAGUGCACGCUCUAUCAAAAUCGUUUAUUUUAAAUUAGGUGUGCACUAAAAU
........((((((((((.(((.....................))))))))))))).... (-15.13 = -15.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:39 2011