| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,636,339 – 16,636,433 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 16,636,339 – 16,636,433 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.22 |
| Shannon entropy | 0.49809 |
| G+C content | 0.29681 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -9.73 |
| Energy contribution | -9.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 16636339 94 + 24543557 ------------------------UGUAGACAUGCAUACAUUUUUCAAAGUGUAAA-AUGUAUUAUGGUCAAAAUAAAUUGCAAACCAAUCCAGGUAACUGUAAAUGGUUAUCAAACAA ------------------------(((.(((....(((((((((.(.....).)))-))))))....)))........(((..(((((...(((....)))....)))))..)))))). ( -17.90, z-score = -1.36, R) >droSim1.chr3L 15967189 92 + 22553184 ------------UAUCAACGUGGAACGAUUGAUA-GUGCAUUUUUCGAAGUGUAAA-AUGUAUUAUGGUCAAAAUA-------------UGCAGGUAACUGUAAAUGGUUAUCAAACAA ------------......((((....((((.(((-(((((((((.........)))-)))))))))))))....))-------------))..(((((((......)))))))...... ( -19.10, z-score = -1.45, R) >droSec1.super_0 8714308 92 + 21120651 ------------UAUCAACGUGGAACGAUUGAUA-GUGCAUUUUUCGAAGUGUAAA-AUGUAUUAUGGUCAAAAUA-------------UGCAGGUAACUGUAAAUGGUUAUCAAACAA ------------......((((....((((.(((-(((((((((.........)))-)))))))))))))....))-------------))..(((((((......)))))))...... ( -19.10, z-score = -1.45, R) >droYak2.chr3L 6763296 115 - 24197627 AGUUGAUAGUUAUAAGACGAACCAAUUACUCAUAUGUACAUUUUUCGAAGUGUAUUUAUUUAUUAUGGUCAAAAUAAAUUGCAC-CGAAUGAAGGUAACUGUAAAAUGUUAUCAAA--- ..(((((((((....)))..(((.........((.((((((((....)))))))).))((((((.(((((((......))).))-))))))))))).............)))))).--- ( -19.30, z-score = -0.50, R) >consensus ____________UAUCAACGUGGAACGAUUCAUA_GUACAUUUUUCGAAGUGUAAA_AUGUAUUAUGGUCAAAAUA_____________UGCAGGUAACUGUAAAUGGUUAUCAAACAA ....................................(((((((....))))))).......................................(((((((......)))))))...... ( -9.73 = -9.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:38 2011