| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,625,541 – 16,625,648 |
| Length | 107 |
| Max. P | 0.897034 |
| Location | 16,625,541 – 16,625,648 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.48 |
| Shannon entropy | 0.21783 |
| G+C content | 0.50465 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -15.82 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16625541 107 + 24543557 ACCGCACCACCCAAGCCCCCAAUCCUCCAAUCCUCCAAUCCACCCACUUUCCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU .................................(((((((............(....)...((((((((.(((......))).).)))))))......))))))).. ( -16.10, z-score = -1.76, R) >droEre2.scaffold_4784 8559310 99 - 25762168 --------UCCGCACCUCCGCACCACCCAAGCCUCCAAUCCACCCACUUUCCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU --------...((......))............(((((((............(....)...((((((((.(((......))).).)))))))......))))))).. ( -17.60, z-score = -1.60, R) >droYak2.chr3L 6752216 93 - 24197627 --------------CACUUGCACCUCCCAAGCCUCCAAUUCACCCACUUUCCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU --------------..((((.......))))..(((((((............(....)...((((((((.(((......))).).)))))))......))))))).. ( -14.70, z-score = -0.30, R) >droSec1.super_0 8703449 99 + 21120651 --------ACCGCACCUCCGCUCCACCCAAGCCUCCAAUCCACCCACUUACCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU --------...((......))............(((((((......(((((((..((((..((((..........))))..)))).)).)))))....))))))).. ( -18.40, z-score = -1.81, R) >droSim1.chr3L 15956711 99 + 22553184 --------ACCGCACCUCCGCACCACCCAAGCCUCCAAUCCACCCACUUACCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU --------...((......))............(((((((......(((((((..((((..((((..........))))..)))).)).)))))....))))))).. ( -18.90, z-score = -2.06, R) >consensus ________ACCGCACCUCCGCACCACCCAAGCCUCCAAUCCACCCACUUUCCGCCCGCAACUACUCAAAGACUAAAGUAAGUGUGUUGAGUAAGCACAGAUUGGAAU .................................(((((((............(....)...((((((((.(((......))).).)))))))......))))))).. (-15.82 = -15.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:34 2011