| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,608,567 – 16,608,617 |
| Length | 50 |
| Max. P | 0.876933 |
| Location | 16,608,567 – 16,608,617 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 68.63 |
| Shannon entropy | 0.57668 |
| G+C content | 0.51733 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -9.40 |
| Energy contribution | -8.72 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16608567 50 + 24543557 GCCGACGUUUCGAUAGAC-GACGGCUCGAUACAAGUAUCGCAUUGCUGGCG (((..((((......)))-)..(((.(((((....)))))....)))))). ( -14.70, z-score = -0.95, R) >droAna3.scaffold_13337 9313605 50 - 23293914 GUGGCCAGUGCUGCCAAGCGUAUACUCUAGUAUAAUUUAGUAUUUUUUAU- .((((.......))))....(((((....)))))................- ( -6.70, z-score = 0.66, R) >droEre2.scaffold_4784 8547777 51 - 25762168 GCCGACGUUUCGAUAGGCCGUUGGUUCGAUAGGACUAUCGCAUGGCUGGCG (((((....))....((((((((((((....))))))....))))))))). ( -16.70, z-score = -0.87, R) >droSec1.super_0 8691760 51 + 21120651 GCCGACGUUUCGAUAGACCGUCGGCUCGAUACAAGUAUCGCAUUGAUGACG (((((((..((....)).))))))).(((((....)))))........... ( -16.90, z-score = -2.06, R) >droSim1.chr3L 15945366 51 + 22553184 GCAGACGUUUCGAUAGACCGUCGGCUCGAUACAAGUAUCGCAUUGCUGGCG ..................(((((((.(((((....)))))....))))))) ( -14.10, z-score = -0.59, R) >consensus GCCGACGUUUCGAUAGACCGUCGGCUCGAUACAAGUAUCGCAUUGCUGGCG ((((((((((....)))).)))))).(((((....)))))........... ( -9.40 = -8.72 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:31 2011