| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,564,095 – 16,564,205 |
| Length | 110 |
| Max. P | 0.916074 |
| Location | 16,564,095 – 16,564,205 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Shannon entropy | 0.34586 |
| G+C content | 0.57381 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -22.70 |
| Energy contribution | -23.46 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16564095 110 - 24543557 CCCCGCGGGCACGCGACUCCCACUUGGACACGCCAUGCUCUGCUUGGCCCUGCUCCUCUCCUCUCCGCCUUCCAAGGACCGCGGGGACACAUUAAACA---UUUAAUUUCGUU (((((((((((.(((..(((.....)))..)))..)))....(((((....((.............))...)))))..))))))))............---............ ( -32.92, z-score = -1.79, R) >droEre2.scaffold_4784 8510311 100 + 25762168 CCCCGCGGGCACGCGACUCUCGCUUGGACACGCCAUGCUCAGCU----------CCAUUCUGCUCCCCUUUUUAAGGAGCGCGGGGACACAUUAAAUA---UAUAAUUUCGCU (((((((((((.(((.....))).(((.....))))))))....----------.......(((((.........)))))))))))............---............ ( -33.70, z-score = -2.62, R) >droYak2.chr3L 6703739 95 + 24197627 CCCCGUGGGCACGCGACU---ACUUGGACACGCCAUUCUCUGCU------------CCCCCACUCCCCUUUCCAAGGACCGCGGGGACACAUUAAAUA---UUUAAUUUCUUU (((((((((((.(.((..---...(((.....))).)).)))).------------..........(((.....))).))))))))............---............ ( -23.10, z-score = -1.35, R) >droSec1.super_0 8656290 112 - 21120651 CCCCG-GGGCACGCGACUCCCACUUGGACACGCCAUGCUCCGCUUGGCUGUGCUCCUGCUCUUUCCGCCGUCCAAGGACCGCGGGGACACAUUAAACAACAUUUAAUUUCGUU (((((-((((((.....(((.....)))...((((.((...)).)))).)))))))..........((.(((....))).))))))........................... ( -36.40, z-score = -1.45, R) >droSim1.chr3L 15909339 113 - 22553184 CCCCGCGGGCACGCGACUCCCACUUGGACACGCCAUGCUCUGCUUGGCUCUGCUACUGCCCUUUCCGCCGUCCAAGGACCGCGGGGACACAUUAAACAACCUUUAAUUUCGUU (((((((((....)........(((((((..((((.((...)).))))...((....))..........)))))))..))))))))........................... ( -37.90, z-score = -2.64, R) >consensus CCCCGCGGGCACGCGACUCCCACUUGGACACGCCAUGCUCUGCUUGGC__UGCUCCUCCCCUCUCCGCCUUCCAAGGACCGCGGGGACACAUUAAACA___UUUAAUUUCGUU (((((((((((.(((..(((.....)))..)))..))).........................(((.........)))))))))))........................... (-22.70 = -23.46 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:27 2011