| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,563,968 – 16,564,073 |
| Length | 105 |
| Max. P | 0.947544 |
| Location | 16,563,968 – 16,564,073 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 86.50 |
| Shannon entropy | 0.22795 |
| G+C content | 0.42272 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -22.54 |
| Energy contribution | -21.70 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16563968 105 - 24543557 UAAACAAUAUUUGGAUUUUUUUGUGGUGUUUAGCCCUAGGAAAUAUUCGGAAUUCCCGCGAGUUUUUGCCGCUCGAAUAUGUCGACGGCUUCAAUACUUGUCAUU .........((((((((((((((.(((.....))).))))))).)))))))......((((((....((((.((((.....))))))))......)))))).... ( -25.90, z-score = -1.32, R) >droEre2.scaffold_4784 8510203 97 + 25762168 -----CGAAUCUGGAUUUUC---UGGGGCUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCUGCUUGAAUAUGUCGACGGCUUCAAUACUUGUCAUU -----.((((((((((((((---((((((...))))))))))..)))))).))))..((((((....((((.((((.....))))))))......)))))).... ( -33.10, z-score = -3.45, R) >droYak2.chr3L 6703631 97 + 24197627 -----CGAAUCUGGAUUUUC---UGGGGCUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCUGCUUGAAUAUGUCGACGGCUUCAAUACUUGUCAUU -----.((((((((((((((---((((((...))))))))))..)))))).))))..((((((....((((.((((.....))))))))......)))))).... ( -33.10, z-score = -3.45, R) >droSec1.super_0 8656164 104 - 21120651 CAUACAAAAUCUGAAUUUUC-CGUGGGUUUCAGCCCUAGAAAAUAUUUGGAAUUCCCUCGAGUUUUUGCCGCUCGAAUGUGUCGACGGCUUCAAUACUUGUCAUU .........((..(((((((-...((((....))))..))))..)))..)).......(((((....((((.((((.....))))))))......)))))..... ( -25.70, z-score = -1.70, R) >droSim1.chr3L 15909213 104 - 22553184 CAUACAAAAUCUGAAUUUUC-CGUGGGUUUCAGCCCUAGAAAAUAUUUGGAAUUCCCUCGAGUUCUUGCCGCUCGAAUGUGUCGACGGCUUCAAUACUUGUCAUU ...((((....(((((((((-...((((....))))..))))))....(((((((....))))))).((((.((((.....)))))))).)))....)))).... ( -26.00, z-score = -1.81, R) >consensus _A_ACAAAAUCUGGAUUUUC__GUGGGGUUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCCGCUCGAAUAUGUCGACGGCUUCAAUACUUGUCAUU .........(((((((((((....(((......)))..))))..)))))))......((((((....((((.((((.....))))))))......)))))).... (-22.54 = -21.70 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:26 2011