| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,558,551 – 16,558,641 |
| Length | 90 |
| Max. P | 0.781283 |
| Location | 16,558,551 – 16,558,641 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Shannon entropy | 0.36106 |
| G+C content | 0.35687 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.62 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16558551 90 - 24543557 CUUUCGCGAAAGUGAAACCUAUUAGUUUAUUCAGUGAAUACAAAACU------------------UCUAAGCCAUAAUUCAUUAACAGCCAAGCUGCCCAUUUAGGAA .((((((....))))))((((...........(((((((........------------------...........)))))))..((((...))))......)))).. ( -16.91, z-score = -2.03, R) >droSim1.chr3L 15903769 90 - 22553184 CUUUCGCGAAAAUGAAACCUAUUAGUUUAUUCAGUGAAUUACAAACG------------------UGUAAGCCAUAAUUCAUUGACAGCCAAGCUGCCCAUUUAGGAA .(((((......)))))((((.........(((((((((((....(.------------------.....)...)))))))))))((((...))))......)))).. ( -16.00, z-score = -1.15, R) >droSec1.super_0 8651078 90 - 21120651 CUUUCGCGAAAGUGAAACCUAUUAGUUUAUUCAGUGAAUUACAAACG------------------CCUAAGCCAUAAUUCAUUAACAGCCAAGCUGCCCAUUUAGGAA .((((((....))))))((((...........(((((((((.....(------------------(....))..)))))))))..((((...))))......)))).. ( -20.20, z-score = -3.10, R) >droYak2.chr3L 6698202 108 + 24197627 UUAUCGCGAAAGUGAAACCUAUUAAUUUAUUCAGCAAAUUACAAGCUUCAACUUGGCAACUUGGCUCAAAACGAUAAGUCAUAAAUAGCCAAGCUGCCCAUUUAGGAA ...((((....))))..((((...........(((.........))).......((((.(((((((......((....))......))))))).))))....)))).. ( -27.40, z-score = -3.43, R) >droEre2.scaffold_4784 8504828 99 + 25762168 -----ACGAAAGUGAAACCUAAUAAUUUAUUCAGUGAUUUAAAAACUUCAA----AGAACUUGGCUCAAAGCAAUAAUUCAUUAACAGCCAAGCUGCCCAUUUAGGAA -----((....))....(((((.......(((..(((..........))).----.)))(((((((....................)))))))........))))).. ( -16.45, z-score = -1.12, R) >consensus CUUUCGCGAAAGUGAAACCUAUUAGUUUAUUCAGUGAAUUACAAACU__________________UCUAAGCCAUAAUUCAUUAACAGCCAAGCUGCCCAUUUAGGAA .((((((....))))))((((.((((((((...))))))))............................................((((...))))......)))).. (-10.34 = -11.62 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:25 2011