| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,537,400 – 16,537,503 |
| Length | 103 |
| Max. P | 0.601204 |
| Location | 16,537,400 – 16,537,503 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.95 |
| Shannon entropy | 0.56749 |
| G+C content | 0.43451 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -7.47 |
| Energy contribution | -7.83 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16537400 103 - 24543557 ---------GUGCUCAUGCAUGUGG-AAUUACUUCAGAGUUUCACGUCAUUCCUC-UAACUAAUAUACCCAUUUAACCCUACUCAUACCUCGCAGCAACUCGAUUGCUGCCGUG ---------((((....))))((((-((((.......))))))))..........-...................................(((((((.....))))))).... ( -19.50, z-score = -1.94, R) >droSim1.chr3L 15876083 103 - 22553184 ---------AAGCUCAUUUUUGUAG-AAUUGCUUUAGAGUUUCAUGCCAUCCCUC-UAACAAAUAUACCCAUUUAACCCUACUCAUACCUCGCAGCAACUCGAUUGCUGCCGUG ---------............((((-.......((((((.............)))-))).((((......))))....)))).........(((((((.....))))))).... ( -14.72, z-score = -1.24, R) >droSec1.super_0 8622706 103 - 21120651 ---------GAGCUCAUGUUUGUGG-AAUUGCUUUAGAGUUUCAUGUCAUCCCUC-UAACAAAUAUACCCAUUUAACCCUACUCAUACCUCGCAGCAACUCGAUUGCUGCCGUG ---------(((.....(((.((((-.(((...((((((.............)))-)))..)))....))))..)))....))).......(((((((.....))))))).... ( -18.52, z-score = -1.19, R) >droYak2.chr3L 6675263 113 + 24197627 AUUCUCUUGCUUUGAUCUUAUGUCG-AAUAGCUUCAGAGUUUUGUGUCAUCCUUCAAAACCAAUAUACCCAUCCAACCCUACUCGUACCUCGCAGCAACUCGAUUGCUGCCGUG ..(((...((((((((.....))))-)..)))...)))((((((..........))))))...............................(((((((.....))))))).... ( -18.20, z-score = -1.36, R) >droEre2.scaffold_4784 8481423 94 + 25762168 --------------------UGUCGUAUUAACUUCAGCGUAUUGCGUCAUCCCUCGUAACCAAUAUGCCCAUCUAACCCUACUCAUACCUCGCAGCUACCCGAUUGCUGCCGUG --------------------................((((((((.((.((.....)).)))))))))).......................(((((.........))))).... ( -16.20, z-score = -1.85, R) >droAna3.scaffold_13337 9257158 99 + 23293914 -------------UAAAGUUUAUAGGGUUAAGUUCUUUAGAUUCCAUUCUUAAGA-AAACUAAUACAACCCUUAAAGCCCG-AAAUACCCAGUAACAAGUCGAUUGCCGCCGUU -------------....((((..((((((.(((((((.(((......))).))))-..))).....))))))..))))...-.........((..(((.....)))..)).... ( -12.90, z-score = -0.07, R) >consensus ___________GCUCAUGUUUGUAG_AAUAACUUCAGAGUUUCACGUCAUCCCUC_UAACAAAUAUACCCAUUUAACCCUACUCAUACCUCGCAGCAACUCGAUUGCUGCCGUG ...........................................................................................(((((((.....))))))).... ( -7.47 = -7.83 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:24 2011