| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,529,331 – 16,529,422 |
| Length | 91 |
| Max. P | 0.625942 |
| Location | 16,529,331 – 16,529,422 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.06 |
| Shannon entropy | 0.52945 |
| G+C content | 0.53249 |
| Mean single sequence MFE | -24.13 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16529331 91 + 24543557 GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCUUAGUCACC-AGUCACCAUCCUUUUGCAUACUAAGCGGCGGUUUCACCAAAGGACCCCC------- ((((((...(((((((((...))))).).)))...)))))).-........(((((((((.......)))..((.....)))))))).....------- ( -25.60, z-score = -1.24, R) >droPer1.super_24 729133 87 - 1556852 GUGACGUUAGCCCUCUC---------UGAUCCCUCAGAUAUU---UCCAUGCCCUUUUGCAUAUUUACUAUGUAGUUCACUCAGAGUCAUCUCUGACCC ((((...........((---------(((....)))))....---...........(((((((.....))))))).))))((((((....))))))... ( -18.10, z-score = -2.64, R) >dp4.chrXR_group8 2229328 87 + 9212921 GUGACGUUAGCCCUCUC---------UGAUCCCUCAGAUAUU---UCCAUGCCCUUUUGCAUAUUUACUAUGUGGUUCACUCAGAAUCAUCCCUGACCC .....(((((.....((---------(((....)))))....---...((((......)))).........(((((((.....)))))))..))))).. ( -15.20, z-score = -1.48, R) >droEre2.scaffold_4784 8473479 88 - 25762168 GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCCUAGUCACC-AGUCACC--CCCUUUGCAUACUAA-CGGCGGUUCCAGCAAAGGACCCCC------- ((((((...(((((((((...))))).).)))...)))))).-.......--.(((((((..(((..-....)))....)))))))......------- ( -28.20, z-score = -2.06, R) >droYak2.chr3L 6667106 91 - 24197627 GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCUUAGUCACC-AGUCACCGCCCUUUUGCAUACUGAGCGGCGGUUUCACCAAAGGACCUCC------- ((((((...(((((((((...))))).).)))...)))))).-.(..(((((((((.........))).))))))..)..............------- ( -30.60, z-score = -2.03, R) >droSec1.super_0 8614590 98 + 21120651 GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCUUAGUCACCCAGUCACCAUCCUUUUGCAUACUAAGCGGCGGUUUCACCAAAGGACCCCAACCCCC- ((((((...(((((((((...))))).).)))...))))))..........(((((((((.......)))..((.....))))))))...........- ( -25.60, z-score = -1.13, R) >droSim1.chr3L 15867737 97 + 22553184 GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCUUAGUCACC-AGUCACCAUCCUUUUGCAUACUAAGCGGCGGUUUCACCAAAGGACACCAACCCCC- ((((((...(((((((((...))))).).)))...)))))).-........(((((((((.......)))..((.....))))))))...........- ( -25.60, z-score = -1.17, R) >consensus GUGACUUUAGCCCUCUGCCAUGCGGAUGAGGCCUUAGUCACC_AGUCACCACCCUUUUGCAUACUAAGCGGCGGUUUCACCAAAGGACCCCC____CC_ (((((...((.((((..((....))..)))).))..)))))...............................(((((.......))))).......... ( -9.79 = -9.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:23 2011