| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,528,348 – 16,528,447 |
| Length | 99 |
| Max. P | 0.939174 |
| Location | 16,528,348 – 16,528,447 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 68.74 |
| Shannon entropy | 0.53147 |
| G+C content | 0.47087 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -12.04 |
| Energy contribution | -13.64 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16528348 99 - 24543557 CCAUUUAGCUGCUGGAAAU-CAUUUUCCGCUUAGCCAGCUGCUGGCUAUUGGCAGUGAACUUUCCCAUUUUCCAAUUUUCCGAUUUUCCAACACUCCUGC .......(((((((((((.-...)))))...(((((((...)))))))..))))))............................................ ( -22.10, z-score = -1.37, R) >droSec1.super_0 8613636 91 - 21120651 CCAUUUACCUGCUGGAAAU-CAUUUUCCGCUUAGCCAGCUGCUGGCUAUUGGCAGUGAACUUUCCCAUUUUCCGAUUUUCCGACCCUCCUGC-------- ...(((((.(((((((((.-...)))))...(((((((...)))))))..))))))))).................................-------- ( -21.00, z-score = -1.76, R) >droYak2.chr3L 6666182 86 + 24197627 CCAUUUAGCUGCUGGAAAU-CAUUUUCCGCUUAGCCAGCUGCUGGCUAUUGGCAGUGAACUUUCCCAUUUUCCGAUUUUCCUCCCAG------------- .......(((((((((((.-...)))))...(((((((...)))))))..))))))...............................------------- ( -22.10, z-score = -1.93, R) >droEre2.scaffold_4784 8472579 84 + 25762168 CCAUUUAGCUGCUGGAAAU-CAUUUUCCGCUUAGCCAGCUGCUGGCUAUUGGCAGUGAACUUUCCCAUUUUCCGAUUUUCCUCCC--------------- .......(((((((((((.-...)))))...(((((((...)))))))..)))))).............................--------------- ( -22.10, z-score = -2.13, R) >droGri2.scaffold_15110 2622269 84 - 24565398 UCCUUCAGCUCCUUCAGUUGCUUCUGUUGCUGUAUCUUAAGCUGCUUUCAGAUAUUA---UCUCCCAUCUCGUAGAUUGGCAGCUGC------------- .....((((.....(((......)))..)))).......(((((((.((((((....---......))))....))..)))))))..------------- ( -17.00, z-score = -0.36, R) >consensus CCAUUUAGCUGCUGGAAAU_CAUUUUCCGCUUAGCCAGCUGCUGGCUAUUGGCAGUGAACUUUCCCAUUUUCCGAUUUUCCGACC_U_____________ .......(((((((((((.....)))))...(((((((...)))))))..))))))............................................ (-12.04 = -13.64 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:22 2011