| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,525,537 – 16,525,639 |
| Length | 102 |
| Max. P | 0.913407 |
| Location | 16,525,537 – 16,525,639 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Shannon entropy | 0.30898 |
| G+C content | 0.49087 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -22.54 |
| Energy contribution | -24.79 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16525537 102 - 24543557 CAGCCAUAAGUGUCGAAUGACAGAUGAUGACGACAUUUAUGAGCUUUCACC------AAGGAGACUUUUCAAUUGGCAGGGUAACGUCUCCGGGGAUUUCCCCAUCGC------ .((((((((((((((.((........))..))))))))))).)))......------..((((((..(((........)))....))))))((((....)))).....------ ( -33.40, z-score = -2.67, R) >droSim1.chr3L 15864026 102 - 22553184 CAGCCGUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------AAGGAGACUUUUCAAUUGGCAGGGUAACGUCUCCGGGGAUUUCCCCAUCGC------ .((((((((((((((.((........))..))))))))))).)))......------..((((((..(((........)))....))))))((((....)))).....------ ( -33.00, z-score = -2.20, R) >droSec1.super_0 8610842 102 - 21120651 CAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------AAGGAGACUUUUCAAUUGGCAGGGUAACGUCUCCGGGGAUUUCCCCAUCGC------ .((((((((((((((.((........))..))))))))))).)))......------..((((((..(((........)))....))))))((((....)))).....------ ( -33.40, z-score = -2.75, R) >droYak2.chr3L 6663469 108 + 24197627 CAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------AAGGAUACUUUUCAAUUGGCAGGGUAACGUCUCCGGGGAUUUCCCCUUCCCCAUCGC .((((((((((((((.((........))..))))))))))).)))......------..(((((((((((....)).)))))).....)))(((((........)))))..... ( -30.10, z-score = -1.32, R) >droEre2.scaffold_4784 8469765 102 + 25762168 CAGCCAUAAGUGUCGAAUGACAGACGAUGGCGACAUUUAUGAGCUUUCACC------AAGGAGACUUUUCAAUUGGCAGGCUAACGUCUCCGGGGAUUUCCCCAUCGC------ .((((((((((((((.....((.....)).))))))))))).)))......------(((....))).......((.((((....))))))((((....)))).....------ ( -35.80, z-score = -3.29, R) >droAna3.scaffold_13337 9245742 93 + 23293914 ----------UGUCGUCUGACAGACGAUGGAGACAUUUAUGGGCCUUUGUUGAGUGGAAAGUGAGUUUUCAAUUGCCACAGCAACGUCUAGGGGGCUUUCCUC----------- ----------.((((((.....))))))(((((..((..(((((..(((((..((((....((......))....))))))))).)))))..))..)))))..----------- ( -26.40, z-score = -0.39, R) >consensus CAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC______AAGGAGACUUUUCAAUUGGCAGGGUAACGUCUCCGGGGAUUUCCCCAUCGC______ .((((((((((((((...............))))))))))).)))..............((((((....................))))))((((....))))........... (-22.54 = -24.79 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:21 2011