| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,508,075 – 16,508,171 |
| Length | 96 |
| Max. P | 0.813659 |
| Location | 16,508,075 – 16,508,171 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 67.49 |
| Shannon entropy | 0.57788 |
| G+C content | 0.47719 |
| Mean single sequence MFE | -22.36 |
| Consensus MFE | -11.46 |
| Energy contribution | -12.15 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16508075 96 + 24543557 -UCCCCGAAAUCUAACAAUGUUAAAUCCUUUGCACAUUACGCUCGGCCUAUGCAACA-UGGCCAUGUGUUGACAGAGCCACGUUAGCACAGCCACUUG-------------------- -...............((((((((.....))).)))))..((..((((.(((...))-))))).(((((((((........)))))))))))......-------------------- ( -20.50, z-score = -0.79, R) >droSim1.chr3L 15852024 83 + 22553184 UCCCCCGAAAUCUAACAAUGUUAAAUCCUU--------------GGCCUAUGCAACU-UGGCCAUGUGUUGACAGAGCCACGUUAGCACAUCCACUUG-------------------- .............................(--------------((((.........-.)))))(((((((((........)))))))))........-------------------- ( -18.20, z-score = -1.74, R) >droSec1.super_0 8598580 83 + 21120651 UCCCCCGAAAUCUAACAAUGUUAAAUCCUU--------------GGCCUAUGCAACU-UGGCCAUGUGUUGACAGAGCCACGUUAGCACAGCCACUUG-------------------- .............................(--------------(((...((((((.-((((..(((....)))..)))).))).)))..))))....-------------------- ( -19.30, z-score = -1.65, R) >droYak2.chr3L 6650909 96 - 24197627 -UCCCCGAAAUCUAACAAUGUUAAAUCCCUUUCACGUUACUCUUGGCCUAUGCAACA-UGGCCAUGUGUUGACAGAGCCACGUUAGCACAGCCACUUG-------------------- -...............(((((.(((....))).))))).....((((...((((((.-((((..(((....)))..)))).))).)))..))))....-------------------- ( -20.50, z-score = -1.40, R) >droEre2.scaffold_4784 8457286 96 - 25762168 -UCCCCGAAAUCUAACAAUGUUAAAUCCUUUUCACGUUACGCUUGGCCUAUGCAACG-UGGCCAUGUGUUGACAGAGCCACGUUAGCACAGCCACUUG-------------------- -...............(((((.(((....))).))))).....((((...(((((((-((((..(((....)))..)))))))).)))..))))....-------------------- ( -27.00, z-score = -2.80, R) >droAna3.scaffold_13337 9234420 94 - 23293914 -UCUCGUAAAUCUAAUGAUGAUAAAUCCUUUUCAGGUU------GGCCUAUACCUCUGUCGCCGUGUGUUGACAGAGCCACGUUAGCACGGCCGCCUGCCA----------------- -((((((.......)))).))...........(((((.------((((.....((((((((........))))))))....((....)))))))))))...----------------- ( -24.30, z-score = -1.05, R) >dp4.chrXR_group8 2213023 114 + 9212921 -UCUCGUAAAUCUAAUGGCGGCAAAUCCUUUAC---UUGCACGGGAAAUACUCGCAAUAGGCCAUGUGUUGACAGAGCUCCGUUAGCAAUGCUCUUCAAACUCUCACUUGCCAAGUCC -..............(((((((((.........---))))..(((((((((..((.....))...)))))((.(((((............)))))))....))))...)))))..... ( -22.80, z-score = 0.38, R) >droPer1.super_24 712851 114 - 1556852 -UCCCGUAAAUCUAAUGGCGGCAAAUCCUUUAC---UUGCACGGGAAAUACUCGCAAUAGGCCAUGUGUUGACAGAGCUCCGUUAGCAAUGCUCUUCAAACUCACACUUGCCAAGUCC -((((((...((....))..((((.........---)))))))))).............(((..((((((((.(((((............)))))))))...))))...)))...... ( -26.30, z-score = -0.62, R) >consensus _UCCCCGAAAUCUAACAAUGUUAAAUCCUUUUC___UU_C_C__GGCCUAUGCAACA_UGGCCAUGUGUUGACAGAGCCACGUUAGCACAGCCACUUG____________________ ..........................................................((((..(((((((((........)))))))))))))........................ (-11.46 = -12.15 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:20 2011