| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,504,745 – 16,504,836 |
| Length | 91 |
| Max. P | 0.642855 |
| Location | 16,504,745 – 16,504,836 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 68.40 |
| Shannon entropy | 0.64087 |
| G+C content | 0.51090 |
| Mean single sequence MFE | -27.51 |
| Consensus MFE | -14.99 |
| Energy contribution | -14.93 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.57 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16504745 91 - 24543557 ------------ACGGCAGCUCGUUUGUUAGCCCUGUCC--CGGGUGAAAUU-AAAAGCAAAUAGCUGCAGUGGGUGUUGGCCAAAGUGGAAGUGUAAGCCAUCGC-- ------------((.((((((.(((((((.((((.....--.))))......-...))))))))))))).))..(((.((((................)))).)))-- ( -25.69, z-score = 0.12, R) >droSim1.chr3L 15848639 91 - 22553184 ------------ACGGCAGCUCGUUUGUUAGCCCUGUCC--CGGGUGAAAUU-AAAAGCAAAUAGCUGCAGUGGGUGUUGGCCAAAGUGGAAGUGUAAGCCAUCGC-- ------------((.((((((.(((((((.((((.....--.))))......-...))))))))))))).))..(((.((((................)))).)))-- ( -25.69, z-score = 0.12, R) >droSec1.super_0 8595266 91 - 21120651 ------------ACGGCAGCUCGUUUGUUAGCCCUGUCC--CGGGUGAAAUU-AAAAGCAAAUAGCUGCAGUGGGUGUUGGCCAAAGUGGAAGUGUAAGCCAUCGC-- ------------((.((((((.(((((((.((((.....--.))))......-...))))))))))))).))..(((.((((................)))).)))-- ( -25.69, z-score = 0.12, R) >droYak2.chr3L 6647514 85 + 24197627 ------------ACGGCAGCUCGUUUGUUAGCCCUGUCC--CGGGUGAAAUU-AAAAGCAAAUAGCUGCAGUGGGUGGUGGCCA------AAGUGGCAGCCAUCGC-- ------------((.((((((.(((((((.((((.....--.))))......-...))))))))))))).)).((((((.(((.------....))).))))))..-- ( -34.30, z-score = -2.27, R) >droEre2.scaffold_4784 8453612 84 + 25762168 ------------ACGGCAGCUCGUUUGUUAGUCCUGUCC--CGGGUGAAAUU-AAAAGCAAAUAGCUGCAGUGGGUGUUGGCCA-------AGUGGAAGCCAUCGC-- ------------((.((((((.((((((((((((((...--))))....)))-)...)))))))))))).))..(((.((((..-------.......)))).)))-- ( -22.50, z-score = 0.44, R) >droAna3.scaffold_13337 9231537 86 + 23293914 ------------ACGGCAGCUCGUUUGUUAG-CCUGUCC--CGGGCGAAAUU-AAAAGCAAAUAGCUGCCGUGGGU---GGCUA---UAGCCAUGGUGGCUAUGGCUC ------------(((((((((.(((((((.(-((((...--)))))......-...))))))))))))))))....---(((((---(((((.....)))))))))). ( -42.00, z-score = -4.22, R) >dp4.chrXR_group8 2210234 96 - 9212921 AUGGCUACAGCGACGGCAGCUCGUUUGUUAGCCCUGUCU-GGGGGUGAAAUU-AAAAGCAAAUAGCUGCAGU-GGG--UGGCUCAG-UGG--UUGCCUGAUAAG---- ...((....)).((.((((((.(((((((.(((((....-.)))))......-...))))))))))))).))-(((--..(((...-.))--)..)))......---- ( -31.10, z-score = -0.25, R) >droPer1.super_24 710048 100 + 1556852 AUGGCUACAGCGACGGCAGCUCGUUUGUUAUCCCUGUCUGGGGGGUGAAAUUAAAAAGCAAAUAUCUGCAGUGGGG--CGGCUCAA-UGG-UUUGCCUGAUAAA---- ..(((.((......(((.((((.....((((((((.....)))))))).........(((......)))....)))--).)))...-..)-)..))).......---- ( -26.20, z-score = 0.81, R) >droWil1.scaffold_180698 3059049 82 + 11422946 ------------ACGGCAGCUCGUUUGUUAA-CUUGUCU--CGAAUGAAAUU-AAAAGCAAAUAACUGCAGU-GGG--UGGUUGGGUUUG-GGUGCCGUUUG------ ------------((((((.((((((((....-.......--)))))))....-..((((...((((..(...-..)--..)))).)))).-).))))))...------ ( -22.30, z-score = -1.28, R) >droMoj3.scaffold_6654 246227 82 + 2564135 ------------GCGGCAGUUCAUUUGUUAGUCUUGUCU--UGAGCGAAAUU-AAAAGCAAAUAGCUGCAGUUGGCCGCGGGGCGGGC-UCUAUGCGA---------- ------------(((((((((.((((((((((.((((..--...)))).)))-)...))))))))))))((((.(((....))).)))-)...)))..---------- ( -25.80, z-score = -0.18, R) >droVir3.scaffold_13049 1503856 83 - 25233164 ------------GCAGCAGCUCGUUUGUUAGUCCUGUCU--CAAGCGAAAUU-AAAAGCAAAUAGCUGCAAUGAGCCUCAGGGCAGGCAGACAGGAGG---------- ------------.......(((((((((..((((((.((--((.((......-...(((.....)))))..))))...))))))..))))))..))).---------- ( -24.10, z-score = -0.57, R) >droGri2.scaffold_15110 2605168 90 - 24565398 ------------AAAGCAGCUCGUUUGUUAGUUCUGUCU--CGAGCGAAAUU-AAAAGCAAAUAGCUGCAGUAGCAGUAGCAGUGGCAUUGGCUGAGGCAGUCGC--- ------------...((((((.(((((((.((((.....--.))))......-...))))))))))))).((..((((.((....))....))))..))......--- ( -24.70, z-score = 0.31, R) >consensus ____________ACGGCAGCUCGUUUGUUAGCCCUGUCC__CGGGUGAAAUU_AAAAGCAAAUAGCUGCAGUGGGUGUUGGCCAAG_UGGAAGUGCAAGCCAUCG___ ...............((((((.(((((((.((((........))))..........)))))))))))))....................................... (-14.99 = -14.93 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:20 2011