| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,453,135 – 16,453,207 |
| Length | 72 |
| Max. P | 0.856882 |
| Location | 16,453,135 – 16,453,207 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 69.80 |
| Shannon entropy | 0.53474 |
| G+C content | 0.46077 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -9.57 |
| Energy contribution | -11.38 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16453135 72 - 24543557 GAAACUUUUCACUCACUCUGGCUGGCUGCUAACCAUAUCUAACAGCUGAUU---GGAAUCGACUAGAUGUGGAGA------------ .....(((((((....((..(..(((((.((........)).)))))..).---.))(((.....))))))))))------------ ( -15.90, z-score = -1.15, R) >droWil1.scaffold_180698 2996018 82 + 11422946 -----AUACCGCUUCCGCUCACCAAACUUCAUCCACAUCGAUCUGCUCAUCUUGAGAGCUGAGCUGAUGGUAGAUACAUCUCAAUAA -----.(((((..((.(((((.........(((......)))..((((.......))))))))).)))))))............... ( -16.10, z-score = -0.92, R) >droEre2.scaffold_4784 8402752 71 + 25762168 GAAACUUUUCACUCACUCU-GCUGGCUGCUAACCAUAUCUAGCAGCUGAUU---GGAAUCGGAUAGACGGGGAGA------------ ...........(((.(((.-.((((((((((........)))))))((((.---...))))..)))..)))))).------------ ( -18.30, z-score = -1.24, R) >droYak2.chr3L 6592894 76 + 24197627 GAAACUUUUCACUCACUCU-GCUGGCUGCUAACCAUAUCUAGCAGCUGAUU---GGAAUCGGAUAGAUGAGACUGGGAGA------- .....((..((((((.(((-(((((((((((........))))))))(((.---...))))).))))))))..))..)).------- ( -21.10, z-score = -1.68, R) >droSec1.super_0 8544753 71 - 21120651 GAAACUUUUCACUCACUCU-GCUGGCUGCUAACCAUAUCUAGCAGCUGAUU---GGAAUCGACUAGAUGGGCAGA------------ ................(((-(((((((((((........))))))))....---...(((.....))).))))))------------ ( -20.10, z-score = -2.00, R) >droSim1.chr3L 15794627 71 - 22553184 GAAACUUUUCACUCACUCU-GCUGGCUGCUAACCAUAUCUAGCAGCUGAUU---GGAAUCGACUAGAUGGGGAGA------------ ....(((..((.((.....-...((((((((........))))))))(((.---...))).....))))..))).------------ ( -19.30, z-score = -1.75, R) >consensus GAAACUUUUCACUCACUCU_GCUGGCUGCUAACCAUAUCUAGCAGCUGAUU___GGAAUCGACUAGAUGGGGAGA____________ ....(((((((.((.........((((((((........))))))))((((.....)))).....)))))))))............. ( -9.57 = -11.38 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:19 2011