| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,403,444 – 16,403,494 |
| Length | 50 |
| Max. P | 0.521976 |
| Location | 16,403,444 – 16,403,494 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 76.73 |
| Shannon entropy | 0.35893 |
| G+C content | 0.35542 |
| Mean single sequence MFE | -8.86 |
| Consensus MFE | -4.68 |
| Energy contribution | -5.24 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.521976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16403444 50 - 24543557 AUUUCACUUUUCUUUCGACUUCUUUUUGCACUGCACGAAAAGUUGUCAUC--------------- ................(((..(((((((.......)))))))..)))...--------------- ( -8.70, z-score = -2.46, R) >droEre2.scaffold_4784 18649108 65 - 25762168 AUUUCACUUUUCAUUCGACUUCUUUUUGCACUGAGCGAAAAUUUGAUGAUACCAGCACUGUCAUC ......................(((((((.....)))))))...(((((((.......))))))) ( -9.60, z-score = -0.88, R) >droYak2.chr3L 2381972 61 + 24197627 AUUUCACUUUUCUUUCGACUUCUUUUUGCACUGAGCGAAAAGUUAAUGAU----GCACUUUUAUC ..............(((....((((((((.....))))))))....))).----........... ( -8.60, z-score = -1.15, R) >droSec1.super_0 8497594 50 - 21120651 AUUUCACUUUUCUUUCGACUUCUUUUUGCACUGCACGAAAAGUUGUCAUC--------------- ................(((..(((((((.......)))))))..)))...--------------- ( -8.70, z-score = -2.46, R) >droSim1.chr3L 15747375 50 - 22553184 AUUUCACUUUUCUUUCGACUUCUUUUUGCACUGCACGAAAAGUUGUCAUC--------------- ................(((..(((((((.......)))))))..)))...--------------- ( -8.70, z-score = -2.46, R) >consensus AUUUCACUUUUCUUUCGACUUCUUUUUGCACUGCACGAAAAGUUGUCAUC_______________ ................(((..(((((((.......)))))))..))).................. ( -4.68 = -5.24 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:15 2011