| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,398,574 – 16,398,667 |
| Length | 93 |
| Max. P | 0.956714 |
| Location | 16,398,574 – 16,398,667 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.56963 |
| G+C content | 0.49910 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.57 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16398574 93 + 24543557 -----------GGAAAGUUUUCA--UCCAAGAUUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC -----------....(((..((.--.....))..)))..((((((((.((((((.(((((...((((.....))))))))).))....))))))))))))...... ( -28.80, z-score = -0.63, R) >droSim1.chr3L 15742484 93 + 22553184 -----------GGGAAGUUUUUA--GCCAAAACUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC -----------(((.((((((..--...)))))).))).((((((((.((((((.(((((...((((.....))))))))).))....))))))))))))...... ( -32.60, z-score = -1.52, R) >droSec1.super_0 8492740 93 + 21120651 -----------GUGAAGUUUUAA--GCCAAAACUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC -----------(((.((((((..--...)))))).....((((((((.((((((.(((((...((((.....))))))))).))....))))))))))))...))) ( -30.10, z-score = -1.09, R) >droYak2.chr3L 2377137 93 - 24197627 -----------GGAAAGUUUUAG--GCCAAGAAUACUUACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC -----------......((((((--((((.((........))))))))))))..((((.....((((((..((.....)).)))))).((((.....)))).)))) ( -30.40, z-score = -0.98, R) >droEre2.scaffold_4784 18644417 93 + 25762168 -----------AGAAAGUUUUAA--GCCAAGACUACUUACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC -----------......((((((--((((.((........))))))))))))..((((.....((((((..((.....)).)))))).((((.....)))).)))) ( -30.40, z-score = -1.14, R) >droVir3.scaffold_13049 1391173 102 + 25233164 ----AAAUUUCAAUUUAUUUAAACGGCAUUUUGUACUCACUCUGGCUUGGGAAUGUGCGCAUUCAGAUCGAGCUUUGUGCAAAUCUCAUCCCAGUCGGGGAAGCAC ----.....................((..(((((((.......((((((((((((....)))))...)))))))..))))))).....((((.....)))).)).. ( -24.70, z-score = -0.85, R) >droMoj3.scaffold_6654 124715 97 - 2564135 AUAGAGAUAUCUAUUUAUAUGAA---------GUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGAUCCAGCUUUGUGCAAAUCUCAUCCCAGUCGGGGAAGCAC ...(((((.((.........)).---------)).))).((((((((.(((((((....)))((((((...((.....))..))))))))))))))))))...... ( -27.70, z-score = -1.15, R) >droGri2.scaffold_15110 2502371 95 + 24565398 ----------ACGGAUAUAGGAUU-AGGAUUUGGACUCACUCUGGCUUGGGAAUGUGCGCAUUCAGAUCGAGCUUUGUGCAGAUCUCAUCCCAGUCGGGGAAGCAC ----------.(.(((...((((.-.(((((((....(((...((((((((((((....)))))...)))))))..)))))))))).))))..))).)........ ( -26.70, z-score = -0.08, R) >apiMel3.Group3 6635031 73 - 12341916 ---------------------------------CUGUUUUUCCGGUUUCGGUAGAUGAGUAUUCAUAUCAAGAGUGGAGCAAAUCUCAUCCCAAUCCGGGAAGCAU ---------------------------------.((((((.((((.((.((..((((((..(((((.......)))))......)))))))))).)))))))))). ( -20.80, z-score = -2.22, R) >droAna3.scaffold_13337 14378914 100 - 23293914 ----AAAUCCUUGUUUAAAAAAA--GCAAAUAGUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGAUCCAGCUUCGUGCAGAUCUCGUCCCAGUCGGGGAAGCAC ----......((((((.....))--))))..........((((((((.(((((((....))).((((((..((.....)).)))))).))))))))))))...... ( -29.80, z-score = -1.74, R) >droWil1.scaffold_180698 2942758 93 - 11422946 ------------GGAUAGUGGUUA-UCAACUGGGACUUACUCUGGCUUGGGAAUGUGGGCAUUCAGAUCGAGCUUCGUGCAAAUCUCAUCCCAAUCGGGGAAGCAC ------------.....(((.((.-.....(((((..(((...((((((((((((....)))))...)))))))..)))....)))))((((....)))))).))) ( -23.00, z-score = 0.59, R) >droPer1.super_24 581793 83 - 1556852 ---------------------CG--AUUUCUUUUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCAUCCCAGUCGGGGAAGCAC ---------------------..--..............((((((((.(((((((....)))(((((((..((.....)).)))))))))))))))))))...... ( -27.70, z-score = -1.51, R) >dp4.chrXR_group8 2085050 83 + 9212921 ---------------------CG--AUAUCUUUUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCAUCCCAGUCGGGGAAGCAC ---------------------..--..............((((((((.(((((((....)))(((((((..((.....)).)))))))))))))))))))...... ( -27.70, z-score = -1.50, R) >consensus ____________GGAAAUUUUAA__GCCAAUAGUACUCACUCUGGCUUGGGAAUGUGCGCAUUGAGGUCCAGCUUCGUGCAGAUCUCAUCCCAGUCGGGGAAGCAC .......................................((((((((.(((.(((.(.((((..((......))..))))....).))))))))))))))...... (-19.66 = -19.57 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:14 2011