| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,393,765 – 16,393,871 |
| Length | 106 |
| Max. P | 0.571769 |
| Location | 16,393,765 – 16,393,871 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 93.40 |
| Shannon entropy | 0.11464 |
| G+C content | 0.43019 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -26.25 |
| Energy contribution | -26.41 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16393765 106 - 24543557 AAUAGCUGUGCCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGAGGCAAUCCCCAAUUUACCGAUCGUGCUGAAAUAUUUCCUAGAGUGAUUUAGUGUUU ....(((((((((....)).))))))).(((((((.(((..(((((.(((.....))).)))))...)))..)))))))........(((((....)))))..... ( -30.10, z-score = -1.92, R) >droEre2.scaffold_4784 18639733 106 - 25762168 AAUAGCUGUACCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGGGGCUAUCCCCAAUUCACCGAUCGCGUUAAAAUAUUUCCGGGAGUAAUUUAGUGGUU ....(((((.((.....))...)))))((((((....(((.....)))((((....)))).....))))))..(((((((.(((((....))))).)))))))... ( -24.60, z-score = 0.71, R) >droYak2.chr3L 2372470 106 + 24197627 AAUAGCUGUGCCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGAGCCUAUCCCCAAUUUACCGAUCGUGCUAAAAUAUUUCCUGGAGUGAUUUAGUGGUU ....(((((((((....)).)))))))(((((((.......(((((.(((.....))).))))))))))))...((((((.(((((....))))).)))))).... ( -30.11, z-score = -1.71, R) >droSec1.super_0 8487978 106 - 21120651 AAUAACUGUGCCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGAGGCAAUCCCCAAUUUACCGAUCGUGCUGAAAUAUUUCCUAGAGUGAUUAAGUGCUU ....(((((((((....)).)))))))(((((((.......(((((.(((.....))).)))))))))))).(..((.((.(((((....))))).)).))..).. ( -27.91, z-score = -1.42, R) >droSim1.chr3L 15737704 106 - 22553184 AAUAACUGUGCCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGAGGCAAUCCCCAAUUUACCGAUCGUGCUGAAAUAUUUCCUAGAGUGAUUAAGUGCUU ....(((((((((....)).)))))))(((((((.......(((((.(((.....))).)))))))))))).(..((.((.(((((....))))).)).))..).. ( -27.91, z-score = -1.42, R) >consensus AAUAGCUGUGCCUAAUUGGAGCACGGUAUCGGUAUCUCGCUAAUUGUGGAGGCAAUCCCCAAUUUACCGAUCGUGCUGAAAUAUUUCCUAGAGUGAUUUAGUGCUU ....(((((((((....)).)))))))(((((((.......(((((.(((.....))).)))))))))))).((((((((.(((((....))))).)))))))).. (-26.25 = -26.41 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:13 2011