| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,374,056 – 16,374,162 |
| Length | 106 |
| Max. P | 0.765738 |
| Location | 16,374,056 – 16,374,162 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.24 |
| Shannon entropy | 0.43709 |
| G+C content | 0.33053 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.05 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16374056 106 - 24543557 CAAAAACUAGUUGUACUUAUGGCAUUGUCAUUAUCAUUGCUUCUACCAAAUUUGAUAAAACAAAA--------------UGAGGAUUGUACAGCUUAGUUCGAUUUUCCUCGUCGAACUA ........((((((((....((((.((.......)).))))....((..((((.........)))--------------)..))...))))))))(((((((((.......))))))))) ( -24.10, z-score = -2.72, R) >droYak2.chr3L 2362464 94 + 24197627 ---------CUAAGUUCUAUGGCAUCGUCUUGAUCAUUGCUACUAUCAAG-AGGAUACUAUUA----------------UAAGGAUUGUAAAACUUAGUUCGGUUUCCCUCGUCUAACUA ---------...((((..((((.(((.(((((((..........))))))-).))).))))..----------------...((((.(..(((((......)))))..)..)))))))). ( -17.10, z-score = -0.29, R) >droSec1.super_0 8468768 120 - 21120651 CGAAAACUAUUUGUACUUAUGGCAUUGCCUUUAUCAUUGCUAAUAUCAAAUUUGAUAAAACAAAAUGUGGUAUUCAUCGUGAUGAUUGUAGAACUUAGUUCGAUUUUCCUCGUCGAACUA ......((((..........(((...)))...(((((..(.(((((((..((((......))))...)))))))....)..))))).))))....(((((((((.......))))))))) ( -24.50, z-score = -1.76, R) >droSim1.chr3L 15717287 118 - 22553184 CAAAAACUAUUUGUACUUAUGGCAUUGUCUUUAUCAUUGCUAAUAUCAAAUUUGAUAAAACAAAAUGUGGUAUUCAUCGUGAGGAUUGUU--AGUUAGUUCGAUUUUCCUCGUCGAACUG ....(((((......(((((((((.((.......)).))).(((((((..((((......))))...)))))))...))))))......)--))))((((((((.......)))))))). ( -26.10, z-score = -2.42, R) >consensus CAAAAACUAUUUGUACUUAUGGCAUUGUCUUUAUCAUUGCUAAUAUCAAAUUUGAUAAAACAAAA______________UGAGGAUUGUA_AACUUAGUUCGAUUUUCCUCGUCGAACUA ..........((((.....(((((.((.......)).))))).((((......))))..))))................................(((((((((.......))))))))) (-11.93 = -12.05 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:10 2011