| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,335,598 – 16,335,693 |
| Length | 95 |
| Max. P | 0.657684 |
| Location | 16,335,598 – 16,335,693 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.44909 |
| G+C content | 0.49286 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -16.56 |
| Energy contribution | -19.13 |
| Covariance contribution | 2.57 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16335598 95 - 24543557 UAAGGGGAAAACAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGAUUGCCGGUUGCAGGUUGCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG .......................((((((((....))))))))((((((((.((((((.(((.......))).)))))).)).))))))...... ( -29.20, z-score = -1.68, R) >droSim1.chr3L 15676211 95 - 22553184 UAAGGGGAAAACAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGAUUGCCGGUUGCAGGUUGCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG .......................((((((((....))))))))((((((((.((((((.(((.......))).)))))).)).))))))...... ( -29.20, z-score = -1.68, R) >droSec1.super_0 8430335 95 - 21120651 UAAGGGGAAAACAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGAUUGCCGGUUGCAGGUUGCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG .......................((((((((....))))))))((((((((.((((((.(((.......))).)))))).)).))))))...... ( -29.20, z-score = -1.68, R) >droYak2.chr3L 2330145 95 + 24197627 UAAGGGGAAAACAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGGUUGCCGGAUGCAGGUUGCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG ...........(((..(...(((((((((((....)))))))))))...)..)))..((((((((((((........))))))))))))...... ( -29.80, z-score = -1.80, R) >droEre2.scaffold_4784 18580744 95 - 25762168 UAAGGGGAAAAUAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGGUUGCCGGAUGCAGGCUUCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG ......((((..........(((((((((((....))))))))))).(((.......)))......)))).(((((((....)))))))...... ( -27.80, z-score = -1.22, R) >droWil1.scaffold_180698 221221 74 + 11422946 AAAGGGGAGGAGGCAAACAAAUUAACUGAGGUCUUCGAACUCCG-UUGUAGUAGAAUAGGCGUGCGUGUUGGUCA-------------------- ...((((.((((((...((.......))..))))))...)))).-........((...((((....))))..)).-------------------- ( -13.60, z-score = 0.94, R) >consensus UAAGGGGAAAACAUAAGAACGCUAGAGGUGGAGUUCCAUUUCUGAUUGCCGGAUGCAGGUUGCAUGUUUCGGGUUGCAGGCGUGCGAUCACAAAG .......................((((((((....))))))))((((((((..(((((.(((.......))).)))))..)).))))))...... (-16.56 = -19.13 + 2.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:08 2011