| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,323,234 – 16,323,343 |
| Length | 109 |
| Max. P | 0.630590 |
| Location | 16,323,234 – 16,323,343 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.05 |
| Shannon entropy | 0.23708 |
| G+C content | 0.33559 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -8.93 |
| Energy contribution | -12.05 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16323234 109 - 24543557 -----GAGUGGAAACAAAGCUUCAUAUAAACAAAAUAAAUAUGUUCCUCACGCACCAGUGAACUAUGUAAUUUUAAUUUAUUGAGCGCAAUAGAUCCCACUCACCAGAUCAACG -----((((((..(((.((...(((((...........)))))....((((......)))).)).))).......((((((((....)))))))).))))))............ ( -20.20, z-score = -2.56, R) >droSim1.chr3L 15663310 109 - 22553184 -----GAGUGGAAACAAAGCUUAAUAUAAACAAAAUAAAUAUGUUUCUUACGCACCAGUAAACUAUUUAAUUUUAAUUUAUUGAGCGCAAUCGAUCCCACUCACCAGAUCAACG -----((((((.......((((((((.....(((.((((((.((((((........)).)))))))))).))).....))))))))..........))))))............ ( -21.33, z-score = -3.94, R) >droSec1.super_0 8417057 109 - 21120651 -----GAGUGGAAACAAAGCUUAAUAUAAACAAAAUAAAUAAGUUCCUUACGCACCAGUAAACUAUUUAAUUUUAAUUUAUUGAGCGCUAUUGAUCCCACUCACCAGAUCAACG -----((((((...(((.((((((((.....(((.((((((.(((...(((......)))))))))))).))).....))))))))....)))...))))))............ ( -22.90, z-score = -4.58, R) >droYak2.chr3L 2316755 111 + 24197627 GAUUAAAAAGAAAAAAAAGGCUCAUAUAAACAAAAUAAAUAUAUUCCUCACGCACCAGUAG--UACUU-GUUUAAACUUGUUGAGGCCAAUAGAUCCCACUCACCAGAUCAACG ..................((((......(((((..((((((.....((.((......))))--....)-)))))...)))))..))))....((((..........)))).... ( -12.00, z-score = -0.20, R) >consensus _____GAGUGGAAACAAAGCUUAAUAUAAACAAAAUAAAUAUGUUCCUCACGCACCAGUAAACUAUUUAAUUUUAAUUUAUUGAGCGCAAUAGAUCCCACUCACCAGAUCAACG .....((((((.......((((((((.....(((.((((((.((...((((......)))))))))))).))).....))))))))..........))))))............ ( -8.93 = -12.05 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:07 2011