| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,321,388 – 16,321,444 |
| Length | 56 |
| Max. P | 0.807788 |
| Location | 16,321,388 – 16,321,444 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 71.36 |
| Shannon entropy | 0.52656 |
| G+C content | 0.62727 |
| Mean single sequence MFE | -19.71 |
| Consensus MFE | -11.20 |
| Energy contribution | -10.51 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16321388 56 - 24543557 UGCCAGAGCAAACAAAAUAUCG-AACCACAAAAGUUGGUGGUGCGGUGGGCGGGCGG .(((...((........(((((-.(((((........))))).))))).)).))).. ( -18.20, z-score = -1.98, R) >droSim1.chr3L 15661522 56 - 22553184 CGCCAGAUCAAACAAACUAUCG-AGCCACAAAAGUUGGUGGUGCGGUGGGCGGGCGG ((((.(......)...((((((-.(((((........))))).))))))...)))). ( -20.10, z-score = -2.16, R) >droSec1.super_0 8415104 56 - 21120651 CGCCAGAUCAAACAAACUAUCG-AGCCACAAAAGUUGGUGGUGCGGUGGGCGGGCGG ((((.(......)...((((((-.(((((........))))).))))))...)))). ( -20.10, z-score = -2.16, R) >droYak2.chr3L 2314738 56 + 24197627 CGCCAGAGCAAACCCACUAUCG-AGCCACAGAAGUUGUUGGUGCGGGGGGCGGGCGG ((((...((...(((..((((.-(((.((....)).)))))))..))).)).)))). ( -20.00, z-score = -0.69, R) >droEre2.scaffold_4784 18565734 54 - 25762168 UGCCAGAGCAAGCAAGCUAUCG-A-CCACAAAAGUUGGUGGUGCGG-GGGCGGGCGG (((....))).((..(((..((-(-((((........))))).)).-.)))..)).. ( -19.20, z-score = -1.34, R) >dp4.chrXR_group8 2012568 57 - 9212921 UGCUUGGGCAAACAAGCCGCCGCAAGUGGAGACGGGCCCAGAGGGGUGGAGCGUCGG .(((((......)))))((.(((...((....)).((((....))))...))).)). ( -20.20, z-score = -0.08, R) >droPer1.super_24 511139 57 + 1556852 UGCUUGGGCAAACAAGCCGCCGCAAGUGGAGACGGGCCCAGAGGGGUGGAGCGUCGG .(((((......)))))((.(((...((....)).((((....))))...))).)). ( -20.20, z-score = -0.08, R) >consensus UGCCAGAGCAAACAAACUAUCG_AACCACAAAAGUUGGUGGUGCGGUGGGCGGGCGG ((((.(......)...((((((...((((........))))..))))))...)))). (-11.20 = -10.51 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:06 2011