| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,285,775 – 16,285,889 |
| Length | 114 |
| Max. P | 0.660905 |
| Location | 16,285,775 – 16,285,889 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 68.17 |
| Shannon entropy | 0.61026 |
| G+C content | 0.42441 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.67 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16285775 114 - 24543557 UCUGACCUUGGAAGUCCUUGCACCGAGUUCAACGACUGACCUCACUGCGUAUAAGCAAGAAGGAGCUUUAUCGCAUUGUAUAAAUAAUAUGGUGGGGCAACA---UUGAAAUUCAAA-- .......(((((..(((((.....(((.(((.....))).)))..(((......)))..)))))(((((((((.(((((....))))).)))))))))....---......))))).-- ( -26.20, z-score = -0.39, R) >droAna3.scaffold_13337 12950149 111 + 23293914 -----GCUGGCUUGUCCUUGC--CGAGUUCGUUGACUGCCCACUCUGCGUAUGAGCAAUGUGCCGGAGGAGGAUAAAAGUCUAAAAAUAUCAAAUGAUAGUUUCAUUGAUAUUUCAAU- -----...(((((((((((.(--((((((....))))...(((..(((......)))..))).)))..)))))))..))))...(((((((((.(((.....))))))))))))....- ( -30.70, z-score = -1.85, R) >droEre2.scaffold_4784 18528406 114 - 25762168 UCUUGUCAUGGAAGUCCUUGCACUGAGUUCAUCGACUGACCUCACUGCGUAUCAGCACUGAGGAGGGAUAUCAACUUGAAUAAACAUAAUGAGGGGGCCACA---UUGAAAUUCAAA-- ..........((.((((((......((((....))))..(((((.(((......))).))))))))))).))...((((((.....(((((.((...)).))---)))..)))))).-- ( -26.00, z-score = 0.44, R) >droYak2.chr3L 2287288 117 + 24197627 UCUUGCCAUGGAAGUCCUUGCAACAGGUUCAUUGACCGACCUCACUGCGUAUAAGCAAUGAGGAGGGAUAAAUAAUUUAAUAAACAUUAUGAAGUGGCAACA--UUUGCAUUUCAAAGA ..(((((((....((((((......((((....))))..(((((.(((......))).)))))))))))..(((((.........)))))...)))))))..--............... ( -29.30, z-score = -1.68, R) >droSec1.super_0 8379866 99 - 21120651 UCUGGCCAUGGAUGUCCUUGCAGCGAGUUCAACGACUGACCUCGCUGCGUAUAAGCAAUAAGGC---------------AUAAUAAAUAUGGUGGGGCAACA---UUGAAAUUCAAA-- (((.((((((.(((.((((((((((((.(((.....))).))))))))((....))...)))))---------------))......)))))).))).....---(((.....))).-- ( -32.40, z-score = -2.75, R) >droSim1.chr3L 15621732 99 - 22553184 UCUGGCCAUGGAAGUCCUUGCAGCGAGUUCAACGACUGACCUCGCUGCGUAUAAGCAAUAAGGA---------------AUAAUAAAUAUGGUGGGGCAACA---UUGAAAUUCAAA-- (((.((((((....(((((((((((((.(((.....))).))))))))((....))...)))))---------------........)))))).))).....---(((.....))).-- ( -32.00, z-score = -3.20, R) >consensus UCUGGCCAUGGAAGUCCUUGCACCGAGUUCAACGACUGACCUCACUGCGUAUAAGCAAUAAGGAGG__UA____AUU__AUAAAAAAUAUGAUGGGGCAACA___UUGAAAUUCAAA__ .............(((((..((...((((....))))..(((...(((......)))...)))..........................))..)))))..................... (-10.80 = -10.67 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:02 2011